Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SOX3P41225 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SOX3P41225 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX3P41225 MAP2K4P1-201ENST00000438453 1195 ntBASIC19.27■□□□□ 0.68
SOX3P41225 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SOX3P41225 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.67
SOX3P41225 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.26■□□□□ 0.67
SOX3P41225 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
SOX3P41225 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
SOX3P41225 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
SOX3P41225 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.26■□□□□ 0.67
SOX3P41225 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.26■□□□□ 0.67
SOX3P41225 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
SOX3P41225 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
SOX3P41225 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
SOX3P41225 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC19.26■□□□□ 0.67
SOX3P41225 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC19.26■□□□□ 0.67
SOX3P41225 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC19.26■□□□□ 0.67
SOX3P41225 LINC01006-201ENST00000333319 2292 ntBASIC19.26■□□□□ 0.67
SOX3P41225 RBM17P2-201ENST00000616397 1405 ntBASIC19.25■□□□□ 0.67
SOX3P41225 MFF-203ENST00000349901 1716 ntTSL 2 BASIC19.25■□□□□ 0.67
SOX3P41225 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SOX3P41225 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
SOX3P41225 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.25■□□□□ 0.67
SOX3P41225 NCF1B-203ENST00000435988 1254 ntBASIC19.25■□□□□ 0.67
SOX3P41225 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.25■□□□□ 0.67
SOX3P41225 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
SOX3P41225 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC19.24■□□□□ 0.67
SOX3P41225 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
SOX3P41225 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
SOX3P41225 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.24■□□□□ 0.67
SOX3P41225 APTR-203ENST00000430801 583 ntTSL 5 BASIC19.24■□□□□ 0.67
SOX3P41225 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC19.24■□□□□ 0.67
SOX3P41225 AC007322.4-201ENST00000509611 723 ntBASIC19.24■□□□□ 0.67
SOX3P41225 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC19.24■□□□□ 0.67
SOX3P41225 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC19.24■□□□□ 0.67
SOX3P41225 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SOX3P41225 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
SOX3P41225 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 AC068338.2-201ENST00000563278 1430 ntBASIC19.24■□□□□ 0.67
SOX3P41225 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
SOX3P41225 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
SOX3P41225 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.24■□□□□ 0.67
SOX3P41225 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
SOX3P41225 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.23■□□□□ 0.67
SOX3P41225 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.23■□□□□ 0.67
SOX3P41225 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
SOX3P41225 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.23■□□□□ 0.67
SOX3P41225 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC19.22■□□□□ 0.67
SOX3P41225 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 GPX1P1-201ENST00000388829 606 ntBASIC19.22■□□□□ 0.67
SOX3P41225 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SOX3P41225 CYP2T1P-201ENST00000432607 1285 ntBASIC19.22■□□□□ 0.67
SOX3P41225 PLLP-204ENST00000569059 665 ntTSL 3 BASIC19.22■□□□□ 0.67
SOX3P41225 AC104771.1-201ENST00000603335 964 ntBASIC19.22■□□□□ 0.67
SOX3P41225 AL121832.2-201ENST00000610979 668 ntBASIC19.22■□□□□ 0.67
SOX3P41225 AC243732.1-201ENST00000612648 864 ntBASIC19.22■□□□□ 0.67
SOX3P41225 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
SOX3P41225 AL109923.1-201ENST00000618799 583 ntBASIC19.22■□□□□ 0.67
SOX3P41225 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC19.22■□□□□ 0.67
SOX3P41225 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.22■□□□□ 0.67
SOX3P41225 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
SOX3P41225 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC19.22■□□□□ 0.67
SOX3P41225 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.21■□□□□ 0.67
SOX3P41225 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC19.21■□□□□ 0.67
SOX3P41225 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SOX3P41225 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms