Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC21.69■■□□□ 1.06
BDNFP23560 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC21.69■■□□□ 1.06
BDNFP23560 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
BDNFP23560 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
BDNFP23560 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC21.69■■□□□ 1.06
BDNFP23560 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BDNFP23560 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
BDNFP23560 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
BDNFP23560 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
BDNFP23560 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
BDNFP23560 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
BDNFP23560 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
BDNFP23560 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.68■■□□□ 1.06
BDNFP23560 RNA5SP413-201ENST00000516373 109 ntBASIC21.68■■□□□ 1.06
BDNFP23560 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC21.68■■□□□ 1.06
BDNFP23560 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 TBCB-214ENST00000629269 413 ntTSL 5 BASIC21.68■■□□□ 1.06
BDNFP23560 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.68■■□□□ 1.06
BDNFP23560 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
BDNFP23560 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC21.68■■□□□ 1.06
BDNFP23560 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
BDNFP23560 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.67■■□□□ 1.06
BDNFP23560 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.67■■□□□ 1.06
BDNFP23560 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
BDNFP23560 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
BDNFP23560 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.67■■□□□ 1.06
BDNFP23560 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC21.67■■□□□ 1.06
BDNFP23560 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.67■■□□□ 1.06
BDNFP23560 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC21.67■■□□□ 1.06
BDNFP23560 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC21.67■■□□□ 1.06
BDNFP23560 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC21.67■■□□□ 1.06
BDNFP23560 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
BDNFP23560 MIR4651-201ENST00000582622 73 ntBASIC21.67■■□□□ 1.06
BDNFP23560 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
BDNFP23560 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
BDNFP23560 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
BDNFP23560 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BDNFP23560 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
BDNFP23560 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
BDNFP23560 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
BDNFP23560 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BDNFP23560 TSPY20P-201ENST00000450910 630 ntBASIC21.66■■□□□ 1.06
BDNFP23560 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC21.66■■□□□ 1.06
BDNFP23560 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC21.66■■□□□ 1.06
BDNFP23560 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.66■■□□□ 1.06
BDNFP23560 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
BDNFP23560 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.66■■□□□ 1.06
BDNFP23560 AC087633.2-202ENST00000565166 1439 ntBASIC21.65■■□□□ 1.06
BDNFP23560 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.65■■□□□ 1.06
BDNFP23560 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC21.65■■□□□ 1.06
BDNFP23560 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.65■■□□□ 1.06
BDNFP23560 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC21.65■■□□□ 1.06
BDNFP23560 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 AC105020.6-201ENST00000621523 1217 ntBASIC21.65■■□□□ 1.06
BDNFP23560 AC121338.2-201ENST00000622535 1744 ntBASIC21.65■■□□□ 1.06
BDNFP23560 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC21.65■■□□□ 1.06
BDNFP23560 FUZ-216ENST00000533418 1524 ntTSL 5 BASIC21.65■■□□□ 1.06
BDNFP23560 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
BDNFP23560 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.64■■□□□ 1.06
BDNFP23560 ABHD17AP1-201ENST00000358206 933 ntBASIC21.64■■□□□ 1.05
BDNFP23560 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC21.64■■□□□ 1.05
BDNFP23560 NME6-213ENST00000451657 871 ntTSL 2 BASIC21.64■■□□□ 1.05
BDNFP23560 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC21.64■■□□□ 1.05
BDNFP23560 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC21.64■■□□□ 1.05
BDNFP23560 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
BDNFP23560 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
BDNFP23560 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BDNFP23560 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
BDNFP23560 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.63■■□□□ 1.05
BDNFP23560 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.63■■□□□ 1.05
BDNFP23560 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
BDNFP23560 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC21.63■■□□□ 1.05
BDNFP23560 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
BDNFP23560 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC21.62■■□□□ 1.05
BDNFP23560 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
BDNFP23560 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC21.62■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms