Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AL024507.2-201ENST00000606070 2574 ntBASIC21.41■■□□□ 1.02
HMGA1P17096 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 PGM5P4-201ENST00000421970 445 ntBASIC21.41■■□□□ 1.02
HMGA1P17096 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.41■■□□□ 1.02
HMGA1P17096 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 REXO2-208ENST00000539754 791 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGA1P17096 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC21.41■■□□□ 1.02
HMGA1P17096 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC21.41■■□□□ 1.02
HMGA1P17096 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGA1P17096 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC21.41■■□□□ 1.02
HMGA1P17096 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
HMGA1P17096 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21.41■■□□□ 1.02
HMGA1P17096 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGA1P17096 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.4■■□□□ 1.02
HMGA1P17096 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.4■■□□□ 1.02
HMGA1P17096 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
HMGA1P17096 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.4■■□□□ 1.02
HMGA1P17096 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC21.4■■□□□ 1.02
HMGA1P17096 AC093827.2-201ENST00000512654 315 ntBASIC21.4■■□□□ 1.02
HMGA1P17096 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
HMGA1P17096 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC21.4■■□□□ 1.02
HMGA1P17096 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC21.39■■□□□ 1.02
HMGA1P17096 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC21.39■■□□□ 1.01
HMGA1P17096 OR2A1-AS1-207ENST00000486094 819 ntBASIC21.39■■□□□ 1.01
HMGA1P17096 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 SOX15-203ENST00000570788 1093 ntBASIC21.39■■□□□ 1.01
HMGA1P17096 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
HMGA1P17096 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
HMGA1P17096 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGA1P17096 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.01
HMGA1P17096 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.38■■□□□ 1.01
HMGA1P17096 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC21.38■■□□□ 1.01
HMGA1P17096 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.38■■□□□ 1.01
HMGA1P17096 AC142381.4-202ENST00000563973 229 ntBASIC21.38■■□□□ 1.01
HMGA1P17096 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.38■■□□□ 1.01
HMGA1P17096 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.38■■□□□ 1.01
HMGA1P17096 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
HMGA1P17096 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGA1P17096 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
HMGA1P17096 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGA1P17096 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.37■■□□□ 1.01
HMGA1P17096 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGA1P17096 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC21.37■■□□□ 1.01
HMGA1P17096 AL158047.1-201ENST00000445918 881 ntBASIC21.37■■□□□ 1.01
HMGA1P17096 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC21.37■■□□□ 1.01
HMGA1P17096 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.37■■□□□ 1.01
HMGA1P17096 BRWD1-AS2-201ENST00000603064 1028 ntBASIC21.37■■□□□ 1.01
HMGA1P17096 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGA1P17096 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.37■■□□□ 1.01
HMGA1P17096 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC21.37■■□□□ 1.01
HMGA1P17096 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGA1P17096 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
HMGA1P17096 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HMGA1P17096 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
HMGA1P17096 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.36■■□□□ 1.01
HMGA1P17096 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC21.36■■□□□ 1.01
HMGA1P17096 AL049796.1-201ENST00000565336 1766 ntBASIC21.36■■□□□ 1.01
HMGA1P17096 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGA1P17096 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HMGA1P17096 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
HMGA1P17096 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC21.36■■□□□ 1.01
HMGA1P17096 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGA1P17096 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGA1P17096 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.36■■□□□ 1.01
HMGA1P17096 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.36■■□□□ 1.01
HMGA1P17096 AC233263.1-201ENST00000578059 224 ntBASIC21.36■■□□□ 1.01
HMGA1P17096 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC21.36■■□□□ 1.01
HMGA1P17096 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
HMGA1P17096 AC027702.1-201ENST00000563810 1770 ntBASIC21.36■■□□□ 1.01
HMGA1P17096 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms