Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 KRT18P29-201ENST00000397031 1267 ntBASIC20.11■□□□□ 0.81
HOXC4P09017 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC20.11■□□□□ 0.81
HOXC4P09017 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC20.11■□□□□ 0.81
HOXC4P09017 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.11■□□□□ 0.81
HOXC4P09017 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC20.11■□□□□ 0.81
HOXC4P09017 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
HOXC4P09017 MIR2861-201ENST00000636310 90 ntBASIC20.11■□□□□ 0.81
HOXC4P09017 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC20.11■□□□□ 0.81
HOXC4P09017 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.11■□□□□ 0.81
HOXC4P09017 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.11■□□□□ 0.81
HOXC4P09017 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HOXC4P09017 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 FEM1AP4-201ENST00000443167 1987 ntBASIC20.1■□□□□ 0.81
HOXC4P09017 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
HOXC4P09017 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
HOXC4P09017 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 UNC93B4-201ENST00000505679 747 ntBASIC20.1■□□□□ 0.81
HOXC4P09017 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.1■□□□□ 0.81
HOXC4P09017 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.1■□□□□ 0.81
HOXC4P09017 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.1■□□□□ 0.81
HOXC4P09017 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
HOXC4P09017 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.1■□□□□ 0.81
HOXC4P09017 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HOXC4P09017 AC079834.2-201ENST00000609776 1949 ntBASIC20.1■□□□□ 0.81
HOXC4P09017 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.09■□□□□ 0.81
HOXC4P09017 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HOXC4P09017 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.09■□□□□ 0.81
HOXC4P09017 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.09■□□□□ 0.81
HOXC4P09017 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.09■□□□□ 0.81
HOXC4P09017 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 IRX5-204ENST00000560154 879 ntTSL 5 BASIC20.09■□□□□ 0.81
HOXC4P09017 AC008403.3-201ENST00000598924 454 ntBASIC20.09■□□□□ 0.81
HOXC4P09017 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC20.09■□□□□ 0.81
HOXC4P09017 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
HOXC4P09017 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HOXC4P09017 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 KRT8P36-201ENST00000489121 1440 ntBASIC20.09■□□□□ 0.81
HOXC4P09017 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HOXC4P09017 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HOXC4P09017 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HOXC4P09017 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HOXC4P09017 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
HOXC4P09017 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HOXC4P09017 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.08■□□□□ 0.81
HOXC4P09017 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
HOXC4P09017 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HOXC4P09017 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
HOXC4P09017 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.08■□□□□ 0.81
HOXC4P09017 SLC29A4P2-201ENST00000504749 1089 ntBASIC20.08■□□□□ 0.81
HOXC4P09017 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC20.08■□□□□ 0.81
HOXC4P09017 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
HOXC4P09017 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
HOXC4P09017 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HOXC4P09017 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
HOXC4P09017 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HOXC4P09017 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.08■□□□□ 0.8
HOXC4P09017 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
HOXC4P09017 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
HOXC4P09017 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 PRORSD1P-201ENST00000295112 541 ntBASIC20.07■□□□□ 0.8
HOXC4P09017 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
HOXC4P09017 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
HOXC4P09017 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
HOXC4P09017 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXC4P09017 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.07■□□□□ 0.8
HOXC4P09017 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.07■□□□□ 0.8
HOXC4P09017 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.07■□□□□ 0.8
HOXC4P09017 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.07■□□□□ 0.8
HOXC4P09017 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 63.6 ms