Protein–RNA interactions for Protein: P06400

RB1, Retinoblastoma-associated protein, humanhuman

Predictions only

Length 928 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RB1P06400 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.86■■□□□ 1.09
RB1P06400 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RB1P06400 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
RB1P06400 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC21.86■■□□□ 1.09
RB1P06400 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
RB1P06400 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC21.86■■□□□ 1.09
RB1P06400 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.86■■□□□ 1.09
RB1P06400 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC21.86■■□□□ 1.09
RB1P06400 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
RB1P06400 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
RB1P06400 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
RB1P06400 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 RCN1P1-201ENST00000400413 996 ntBASIC21.85■■□□□ 1.09
RB1P06400 PENK-204ENST00000518770 863 ntTSL 2 BASIC21.85■■□□□ 1.09
RB1P06400 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.85■■□□□ 1.09
RB1P06400 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC21.85■■□□□ 1.09
RB1P06400 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.85■■□□□ 1.09
RB1P06400 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
RB1P06400 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RB1P06400 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RB1P06400 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RB1P06400 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC21.84■■□□□ 1.09
RB1P06400 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC21.84■■□□□ 1.09
RB1P06400 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.84■■□□□ 1.09
RB1P06400 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
RB1P06400 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.84■■□□□ 1.09
RB1P06400 AC026427.1-201ENST00000508993 555 ntTSL 3 BASIC21.84■■□□□ 1.09
RB1P06400 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.84■■□□□ 1.09
RB1P06400 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC21.84■■□□□ 1.09
RB1P06400 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
RB1P06400 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
RB1P06400 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
RB1P06400 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
RB1P06400 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
RB1P06400 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
RB1P06400 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.83■■□□□ 1.09
RB1P06400 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.83■■□□□ 1.09
RB1P06400 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.83■■□□□ 1.09
RB1P06400 FAM99A-202ENST00000538190 1989 ntBASIC21.83■■□□□ 1.09
RB1P06400 AC080038.3-201ENST00000623346 1952 ntBASIC21.83■■□□□ 1.09
RB1P06400 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.83■■□□□ 1.09
RB1P06400 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
RB1P06400 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RB1P06400 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.09
RB1P06400 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RB1P06400 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
RB1P06400 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
RB1P06400 MOK-233ENST00000524214 1539 ntTSL 2 BASIC21.83■■□□□ 1.09
RB1P06400 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC21.83■■□□□ 1.08
RB1P06400 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RB1P06400 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
RB1P06400 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.08
RB1P06400 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
RB1P06400 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC21.82■■□□□ 1.08
RB1P06400 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.82■■□□□ 1.08
RB1P06400 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.82■■□□□ 1.08
RB1P06400 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 AL356652.1-201ENST00000615962 565 ntBASIC21.82■■□□□ 1.08
RB1P06400 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.82■■□□□ 1.08
RB1P06400 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
RB1P06400 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.82■■□□□ 1.08
RB1P06400 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
RB1P06400 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC21.81■■□□□ 1.08
RB1P06400 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RB1P06400 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC21.81■■□□□ 1.08
RB1P06400 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.81■■□□□ 1.08
RB1P06400 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
RB1P06400 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.81■■□□□ 1.08
RB1P06400 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
RB1P06400 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
RB1P06400 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RB1P06400 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.8■■□□□ 1.08
RB1P06400 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RB1P06400 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC21.8■■□□□ 1.08
RB1P06400 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RB1P06400 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RB1P06400 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RB1P06400 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 50.9 ms