Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.1■□□□□ 0.81
TNFP01375 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.1■□□□□ 0.81
TNFP01375 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TNFP01375 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.1■□□□□ 0.81
TNFP01375 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TNFP01375 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.1■□□□□ 0.81
TNFP01375 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
TNFP01375 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
TNFP01375 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
TNFP01375 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
TNFP01375 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.09■□□□□ 0.81
TNFP01375 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFP01375 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TNFP01375 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
TNFP01375 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
TNFP01375 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
TNFP01375 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.09■□□□□ 0.81
TNFP01375 AC128676.1-201ENST00000454392 318 ntBASIC20.09■□□□□ 0.81
TNFP01375 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFP01375 AL356652.1-201ENST00000615962 565 ntBASIC20.09■□□□□ 0.81
TNFP01375 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.09■□□□□ 0.81
TNFP01375 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC20.09■□□□□ 0.81
TNFP01375 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
TNFP01375 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TNFP01375 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC20.08■□□□□ 0.81
TNFP01375 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC20.08■□□□□ 0.81
TNFP01375 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC20.08■□□□□ 0.81
TNFP01375 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.08■□□□□ 0.81
TNFP01375 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.08■□□□□ 0.81
TNFP01375 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC20.08■□□□□ 0.81
TNFP01375 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC20.08■□□□□ 0.81
TNFP01375 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
TNFP01375 AC011484.1-201ENST00000377652 1995 ntBASIC20.08■□□□□ 0.8
TNFP01375 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TNFP01375 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
TNFP01375 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
TNFP01375 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
TNFP01375 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC20.07■□□□□ 0.8
TNFP01375 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.07■□□□□ 0.8
TNFP01375 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.07■□□□□ 0.8
TNFP01375 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC20.07■□□□□ 0.8
TNFP01375 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.07■□□□□ 0.8
TNFP01375 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.07■□□□□ 0.8
TNFP01375 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
TNFP01375 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
TNFP01375 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.06■□□□□ 0.8
TNFP01375 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.06■□□□□ 0.8
TNFP01375 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.06■□□□□ 0.8
TNFP01375 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC20.06■□□□□ 0.8
TNFP01375 OR2A1-AS1-207ENST00000486094 819 ntBASIC20.06■□□□□ 0.8
TNFP01375 UNC93B4-201ENST00000505679 747 ntBASIC20.06■□□□□ 0.8
TNFP01375 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC20.06■□□□□ 0.8
TNFP01375 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.06■□□□□ 0.8
TNFP01375 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
TNFP01375 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TNFP01375 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
TNFP01375 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 PKD1P6-201ENST00000343738 4769 ntBASIC20.05■□□□□ 0.8
TNFP01375 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.05■□□□□ 0.8
TNFP01375 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TNFP01375 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.05■□□□□ 0.8
TNFP01375 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC20.05■□□□□ 0.8
TNFP01375 AC008403.3-201ENST00000598924 454 ntBASIC20.05■□□□□ 0.8
TNFP01375 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.05■□□□□ 0.8
TNFP01375 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
TNFP01375 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.05■□□□□ 0.8
TNFP01375 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TNFP01375 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms