Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC11O43248 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC20.98■□□□□ 0.95
HOXC11O43248 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.98■□□□□ 0.95
HOXC11O43248 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.98■□□□□ 0.95
HOXC11O43248 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
HOXC11O43248 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
HOXC11O43248 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
HOXC11O43248 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
HOXC11O43248 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.97■□□□□ 0.95
HOXC11O43248 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC11O43248 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
HOXC11O43248 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.97■□□□□ 0.95
HOXC11O43248 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC11O43248 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC11O43248 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC20.97■□□□□ 0.95
HOXC11O43248 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC20.97■□□□□ 0.95
HOXC11O43248 AL356652.1-201ENST00000615962 565 ntBASIC20.97■□□□□ 0.95
HOXC11O43248 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.97■□□□□ 0.95
HOXC11O43248 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
HOXC11O43248 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
HOXC11O43248 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.97■□□□□ 0.95
HOXC11O43248 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
HOXC11O43248 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
HOXC11O43248 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC11O43248 PALM-207ENST00000590161 2137 ntTSL 4 BASIC20.96■□□□□ 0.95
HOXC11O43248 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC11O43248 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 KRT17P3-201ENST00000420566 1262 ntBASIC20.96■□□□□ 0.95
HOXC11O43248 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC20.96■□□□□ 0.95
HOXC11O43248 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.96■□□□□ 0.95
HOXC11O43248 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC11O43248 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC11O43248 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
HOXC11O43248 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC11O43248 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
HOXC11O43248 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.96■□□□□ 0.95
HOXC11O43248 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
HOXC11O43248 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.95■□□□□ 0.94
HOXC11O43248 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC11O43248 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC20.95■□□□□ 0.94
HOXC11O43248 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC11O43248 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.95■□□□□ 0.94
HOXC11O43248 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC11O43248 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
HOXC11O43248 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.95■□□□□ 0.94
HOXC11O43248 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC20.95■□□□□ 0.94
HOXC11O43248 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
HOXC11O43248 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC11O43248 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.95■□□□□ 0.94
HOXC11O43248 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC11O43248 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
HOXC11O43248 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
HOXC11O43248 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC11O43248 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC11O43248 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
HOXC11O43248 AL359736.2-201ENST00000621992 437 ntBASIC20.94■□□□□ 0.94
HOXC11O43248 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.94■□□□□ 0.94
HOXC11O43248 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
HOXC11O43248 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.94■□□□□ 0.94
HOXC11O43248 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
HOXC11O43248 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 AC011484.1-201ENST00000377652 1995 ntBASIC20.94■□□□□ 0.94
HOXC11O43248 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
HOXC11O43248 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.93■□□□□ 0.94
HOXC11O43248 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.93■□□□□ 0.94
HOXC11O43248 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HOXC11O43248 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
HOXC11O43248 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC20.93■□□□□ 0.94
HOXC11O43248 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC20.93■□□□□ 0.94
HOXC11O43248 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms