Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 AL355472.2-201ENST00000422958 438 ntBASIC20.68■□□□□ 0.9
DKK3Q9UBP4 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
DKK3Q9UBP4 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 KRT18P68-201ENST00000392293 1000 ntBASIC20.67■□□□□ 0.9
DKK3Q9UBP4 LSM12P1-201ENST00000411836 588 ntBASIC20.67■□□□□ 0.9
DKK3Q9UBP4 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
DKK3Q9UBP4 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 AL589743.5-201ENST00000616611 1050 ntBASIC20.66■□□□□ 0.9
DKK3Q9UBP4 MYC-209ENST00000641252 345 ntBASIC20.66■□□□□ 0.9
DKK3Q9UBP4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 FEM1AP4-201ENST00000443167 1987 ntBASIC20.66■□□□□ 0.9
DKK3Q9UBP4 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
DKK3Q9UBP4 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 KRT17P1-201ENST00000399211 1546 ntBASIC20.65■□□□□ 0.9
DKK3Q9UBP4 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 AC091874.3-201ENST00000512672 1195 ntBASIC20.65■□□□□ 0.9
DKK3Q9UBP4 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
DKK3Q9UBP4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
DKK3Q9UBP4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
DKK3Q9UBP4 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
DKK3Q9UBP4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
DKK3Q9UBP4 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
DKK3Q9UBP4 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.63■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms