Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC26.41■■□□□ 1.82
SMC4Q9NTJ3 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
SMC4Q9NTJ3 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
SMC4Q9NTJ3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SMC4Q9NTJ3 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 CDV3P1-201ENST00000471403 739 ntBASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 AC016405.3-201ENST00000607710 860 ntBASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 AC080038.1-201ENST00000611274 1154 ntBASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC26.4■■□□□ 1.82
SMC4Q9NTJ3 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 FP700111.2-201ENST00000619190 1892 ntBASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SMC4Q9NTJ3 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC26.39■■□□□ 1.81
SMC4Q9NTJ3 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
SMC4Q9NTJ3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC26.39■■□□□ 1.81
SMC4Q9NTJ3 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 AC027702.1-201ENST00000563810 1770 ntBASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 AC007225.1-201ENST00000566331 1836 ntBASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 DLX3-202ENST00000512495 834 ntTSL 2 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 MAZ-216ENST00000616501 991 ntTSL 5 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 AC068338.2-201ENST00000563278 1430 ntBASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC26.38■■□□□ 1.81
SMC4Q9NTJ3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 AL157384.1-201ENST00000445995 2473 ntBASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 AC073111.5-205ENST00000641717 521 ntBASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SMC4Q9NTJ3 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 SAPCD2P1-201ENST00000395413 1184 ntBASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 AC231657.2-201ENST00000624556 255 ntBASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC26.36■■□□□ 1.81
SMC4Q9NTJ3 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 AC007322.1-201ENST00000426983 750 ntBASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 VPS53-216ENST00000574029 585 ntTSL 4 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 AC092666.2-201ENST00000613287 246 ntBASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
SMC4Q9NTJ3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC26.34■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms