Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 HLA-L-209ENST00000420110 1011 ntBASIC24.3■■□□□ 1.48
RNF41Q9H4P4 GUSBP6-202ENST00000438529 1198 ntBASIC24.3■■□□□ 1.48
RNF41Q9H4P4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 AC104771.1-201ENST00000603335 964 ntBASIC24.3■■□□□ 1.48
RNF41Q9H4P4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 PLK5-205ENST00000642079 1969 ntBASIC24.3■■□□□ 1.48
RNF41Q9H4P4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC24.3■■□□□ 1.48
RNF41Q9H4P4 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 MARS-234ENST00000630571 216 ntTSL 5 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 MARS-235ENST00000630803 183 ntTSL 3 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 AC027702.1-201ENST00000563810 1770 ntBASIC24.29■■□□□ 1.48
RNF41Q9H4P4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
RNF41Q9H4P4 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.28■■□□□ 1.48
RNF41Q9H4P4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 PGM5P4-201ENST00000421970 445 ntBASIC24.27■■□□□ 1.48
RNF41Q9H4P4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 PHB2-213ENST00000546111 858 ntTSL 2 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 CYP2T3P-201ENST00000601990 817 ntBASIC24.27■■□□□ 1.48
RNF41Q9H4P4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.48
RNF41Q9H4P4 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC24.27■■□□□ 1.47
RNF41Q9H4P4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 AC087633.2-202ENST00000565166 1439 ntBASIC24.26■■□□□ 1.47
RNF41Q9H4P4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
RNF41Q9H4P4 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 AC006128.1-201ENST00000624704 1661 ntBASIC24.25■■□□□ 1.47
RNF41Q9H4P4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC24.25■■□□□ 1.47
RNF41Q9H4P4 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC24.24■■□□□ 1.47
RNF41Q9H4P4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RNF41Q9H4P4 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
RNF41Q9H4P4 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
RNF41Q9H4P4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
RNF41Q9H4P4 KRT18P68-201ENST00000392293 1000 ntBASIC24.24■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms