Protein–RNA interactions for Protein: Q9BYV6

TRIM55, Tripartite motif-containing protein 55, humanhuman

Predictions only

Length 548 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM55Q9BYV6 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.69■□□□□ 0.9
TRIM55Q9BYV6 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 AC087239.1-201ENST00000622671 572 ntBASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
TRIM55Q9BYV6 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 GXYLT1P2-201ENST00000433312 1230 ntBASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
TRIM55Q9BYV6 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 KRT18P14-201ENST00000534205 1250 ntBASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 NTF6G-201ENST00000591094 616 ntBASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM55Q9BYV6 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 AC027702.1-201ENST00000563810 1770 ntBASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 OR2I1P-207ENST00000453522 948 ntBASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM55Q9BYV6 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.64■□□□□ 0.9
TRIM55Q9BYV6 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.64■□□□□ 0.9
TRIM55Q9BYV6 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.64■□□□□ 0.9
TRIM55Q9BYV6 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC20.64■□□□□ 0.9
TRIM55Q9BYV6 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM55Q9BYV6 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms