Protein–RNA interactions for Protein: Q9BY42

RTFDC1, Protein RTF2 homolog, humanhuman

Predicted RBP Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1Q9BY42 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC25.2■■□□□ 1.63
RTFDC1Q9BY42 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 TSPY7P-201ENST00000431358 1114 ntBASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 AL049637.2-201ENST00000641778 930 ntBASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC25.2■■□□□ 1.62
RTFDC1Q9BY42 KRT17P2-201ENST00000300992 1314 ntBASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 THEM4-205ENST00000489410 643 ntTSL 2 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 AC005829.2-201ENST00000571422 1056 ntBASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 AL023875.1-201ENST00000640777 796 ntBASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC25.19■■□□□ 1.62
RTFDC1Q9BY42 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 SERP1-205ENST00000487153 657 ntTSL 4 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 TK2-204ENST00000525974 1178 ntTSL 2 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
RTFDC1Q9BY42 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.17■■□□□ 1.62
RTFDC1Q9BY42 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 ABHD17AP6-201ENST00000458502 1044 ntBASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 AC010331.1-201ENST00000611423 582 ntBASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC25.16■■□□□ 1.62
RTFDC1Q9BY42 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 AP001412.1-201ENST00000608405 714 ntBASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 AC110285.5-201ENST00000611501 352 ntBASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC25.15■■□□□ 1.62
RTFDC1Q9BY42 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC25.14■■□□□ 1.62
RTFDC1Q9BY42 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RTFDC1Q9BY42 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC25.14■■□□□ 1.62
RTFDC1Q9BY42 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC25.14■■□□□ 1.62
RTFDC1Q9BY42 AL135905.2-201ENST00000584934 1404 ntBASIC25.14■■□□□ 1.62
RTFDC1Q9BY42 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC25.14■■□□□ 1.62
RTFDC1Q9BY42 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC25.14■■□□□ 1.62
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms