Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 IPPK-202ENST00000375522 882 ntTSL 3 BASIC21.82■■□□□ 1.08
CDX2Q99626 AC009947.2-201ENST00000444014 672 ntBASIC21.82■■□□□ 1.08
CDX2Q99626 ATP5G1P1-201ENST00000448724 379 ntBASIC21.82■■□□□ 1.08
CDX2Q99626 AC004812.2-201ENST00000611079 2094 ntBASIC21.82■■□□□ 1.08
CDX2Q99626 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.82■■□□□ 1.08
CDX2Q99626 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CDX2Q99626 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC21.81■■□□□ 1.08
CDX2Q99626 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.81■■□□□ 1.08
CDX2Q99626 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC21.81■■□□□ 1.08
CDX2Q99626 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC21.81■■□□□ 1.08
CDX2Q99626 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDX2Q99626 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDX2Q99626 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC21.81■■□□□ 1.08
CDX2Q99626 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC21.81■■□□□ 1.08
CDX2Q99626 LCE1C-202ENST00000607093 644 ntAPPRIS P2 BASIC21.81■■□□□ 1.08
CDX2Q99626 CLN6-221ENST00000637494 765 ntTSL 5 BASIC21.81■■□□□ 1.08
CDX2Q99626 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.81■■□□□ 1.08
CDX2Q99626 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CDX2Q99626 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.81■■□□□ 1.08
CDX2Q99626 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.81■■□□□ 1.08
CDX2Q99626 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CDX2Q99626 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDX2Q99626 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDX2Q99626 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.8■■□□□ 1.08
CDX2Q99626 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.8■■□□□ 1.08
CDX2Q99626 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
CDX2Q99626 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDX2Q99626 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.8■■□□□ 1.08
CDX2Q99626 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CDX2Q99626 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDX2Q99626 PTPA-214ENST00000423100 988 ntTSL 2 BASIC21.8■■□□□ 1.08
CDX2Q99626 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.8■■□□□ 1.08
CDX2Q99626 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC21.8■■□□□ 1.08
CDX2Q99626 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC21.8■■□□□ 1.08
CDX2Q99626 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC21.8■■□□□ 1.08
CDX2Q99626 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC21.8■■□□□ 1.08
CDX2Q99626 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC21.8■■□□□ 1.08
CDX2Q99626 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
CDX2Q99626 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
CDX2Q99626 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC21.8■■□□□ 1.08
CDX2Q99626 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.8■■□□□ 1.08
CDX2Q99626 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.8■■□□□ 1.08
CDX2Q99626 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
CDX2Q99626 AC027702.1-201ENST00000563810 1770 ntBASIC21.79■■□□□ 1.08
CDX2Q99626 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.79■■□□□ 1.08
CDX2Q99626 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CDX2Q99626 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.79■■□□□ 1.08
CDX2Q99626 TMEM221-201ENST00000341130 1930 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CDX2Q99626 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CDX2Q99626 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDX2Q99626 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.79■■□□□ 1.08
CDX2Q99626 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC21.79■■□□□ 1.08
CDX2Q99626 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.79■■□□□ 1.08
CDX2Q99626 AC022616.7-201ENST00000525383 220 ntBASIC21.79■■□□□ 1.08
CDX2Q99626 AC027682.6-202ENST00000621378 795 ntTSL 2 BASIC21.79■■□□□ 1.08
CDX2Q99626 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
CDX2Q99626 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDX2Q99626 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDX2Q99626 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
CDX2Q99626 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDX2Q99626 AC142381.3-201ENST00000568208 1670 ntBASIC21.79■■□□□ 1.08
CDX2Q99626 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
CDX2Q99626 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CDX2Q99626 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CDX2Q99626 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
CDX2Q99626 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
CDX2Q99626 AK4P3-201ENST00000418260 669 ntBASIC21.78■■□□□ 1.08
CDX2Q99626 LINC01238-205ENST00000567549 1107 ntBASIC21.78■■□□□ 1.08
CDX2Q99626 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDX2Q99626 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDX2Q99626 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.77■■□□□ 1.08
CDX2Q99626 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDX2Q99626 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
CDX2Q99626 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.77■■□□□ 1.08
CDX2Q99626 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CDX2Q99626 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC21.77■■□□□ 1.08
CDX2Q99626 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC21.77■■□□□ 1.08
CDX2Q99626 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC21.77■■□□□ 1.08
CDX2Q99626 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CDX2Q99626 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC21.77■■□□□ 1.08
CDX2Q99626 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.77■■□□□ 1.08
CDX2Q99626 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC21.77■■□□□ 1.08
CDX2Q99626 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
CDX2Q99626 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
CDX2Q99626 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
CDX2Q99626 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.77■■□□□ 1.07
CDX2Q99626 EXOC3L2-201ENST00000252482 1230 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CDX2Q99626 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDX2Q99626 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC21.76■■□□□ 1.07
CDX2Q99626 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CDX2Q99626 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
CDX2Q99626 AC063952.2-201ENST00000498792 1227 ntBASIC21.76■■□□□ 1.07
CDX2Q99626 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
CDX2Q99626 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms