Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.77■□□□□ 0.76
CLIP3Q96DZ5 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 PPP1R14BP2-201ENST00000426284 444 ntBASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 CDV3P1-201ENST00000471403 739 ntBASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
CLIP3Q96DZ5 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 ABHD17AP1-201ENST00000358206 933 ntBASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 AC010980.2-201ENST00000587099 1412 ntBASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
CLIP3Q96DZ5 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 AC092118.2-201ENST00000613495 667 ntBASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 LINC00565-201ENST00000562710 2331 ntBASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CLIP3Q96DZ5 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 AC091799.1-201ENST00000422823 811 ntBASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.73■□□□□ 0.75
CLIP3Q96DZ5 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms