Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SKA1Q96BD8 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.03■□□□□ 0.96
SKA1Q96BD8 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SKA1Q96BD8 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.02■□□□□ 0.96
SKA1Q96BD8 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.02■□□□□ 0.96
SKA1Q96BD8 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC21.02■□□□□ 0.96
SKA1Q96BD8 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.02■□□□□ 0.96
SKA1Q96BD8 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC21.02■□□□□ 0.96
SKA1Q96BD8 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC21.02■□□□□ 0.96
SKA1Q96BD8 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.02■□□□□ 0.96
SKA1Q96BD8 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SKA1Q96BD8 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC21.02■□□□□ 0.95
SKA1Q96BD8 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 FAM201B-201ENST00000458407 597 ntBASIC21.01■□□□□ 0.95
SKA1Q96BD8 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 AC007322.4-201ENST00000509611 723 ntBASIC21.01■□□□□ 0.95
SKA1Q96BD8 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 AC069236.1-201ENST00000604339 616 ntBASIC21.01■□□□□ 0.95
SKA1Q96BD8 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 FEM1AP1-201ENST00000431297 1995 ntBASIC21.01■□□□□ 0.95
SKA1Q96BD8 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
SKA1Q96BD8 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.01■□□□□ 0.95
SKA1Q96BD8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
SKA1Q96BD8 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21■□□□□ 0.95
SKA1Q96BD8 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
SKA1Q96BD8 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SKA1Q96BD8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC21■□□□□ 0.95
SKA1Q96BD8 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21■□□□□ 0.95
SKA1Q96BD8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
SKA1Q96BD8 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
SKA1Q96BD8 POU5F1P4-201ENST00000413175 1085 ntBASIC21■□□□□ 0.95
SKA1Q96BD8 TSPY20P-201ENST00000450910 630 ntBASIC21■□□□□ 0.95
SKA1Q96BD8 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21■□□□□ 0.95
SKA1Q96BD8 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC21■□□□□ 0.95
SKA1Q96BD8 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SKA1Q96BD8 OR10C1-204ENST00000622521 1039 ntBASIC21■□□□□ 0.95
SKA1Q96BD8 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21■□□□□ 0.95
SKA1Q96BD8 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC21■□□□□ 0.95
SKA1Q96BD8 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SKA1Q96BD8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SKA1Q96BD8 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SKA1Q96BD8 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21■□□□□ 0.95
SKA1Q96BD8 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SKA1Q96BD8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
SKA1Q96BD8 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 42.9 ms