Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
RFX4Q33E94 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC19.09■□□□□ 0.65
RFX4Q33E94 AC018445.3-201ENST00000624177 1945 ntBASIC19.09■□□□□ 0.65
RFX4Q33E94 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC19.09■□□□□ 0.65
RFX4Q33E94 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.09■□□□□ 0.65
RFX4Q33E94 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.08■□□□□ 0.65
RFX4Q33E94 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC19.08■□□□□ 0.65
RFX4Q33E94 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RFX4Q33E94 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
RFX4Q33E94 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC19.08■□□□□ 0.65
RFX4Q33E94 FP700111.2-201ENST00000619190 1892 ntBASIC19.08■□□□□ 0.65
RFX4Q33E94 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
RFX4Q33E94 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX4Q33E94 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX4Q33E94 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX4Q33E94 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
RFX4Q33E94 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.08■□□□□ 0.64
RFX4Q33E94 BX842568.3-201ENST00000418104 571 ntBASIC19.08■□□□□ 0.64
RFX4Q33E94 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC19.08■□□□□ 0.64
RFX4Q33E94 AC133561.4-201ENST00000566112 224 ntBASIC19.08■□□□□ 0.64
RFX4Q33E94 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.08■□□□□ 0.64
RFX4Q33E94 SMUG1P1-201ENST00000590640 811 ntBASIC19.08■□□□□ 0.64
RFX4Q33E94 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.08■□□□□ 0.64
RFX4Q33E94 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
RFX4Q33E94 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.07■□□□□ 0.64
RFX4Q33E94 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
RFX4Q33E94 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
RFX4Q33E94 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
RFX4Q33E94 AC087289.5-201ENST00000586076 3175 ntBASIC19.07■□□□□ 0.64
RFX4Q33E94 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC19.07■□□□□ 0.64
RFX4Q33E94 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC19.07■□□□□ 0.64
RFX4Q33E94 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC19.07■□□□□ 0.64
RFX4Q33E94 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC19.07■□□□□ 0.64
RFX4Q33E94 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC19.07■□□□□ 0.64
RFX4Q33E94 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC19.07■□□□□ 0.64
RFX4Q33E94 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC19.07■□□□□ 0.64
RFX4Q33E94 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
RFX4Q33E94 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX4Q33E94 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
RFX4Q33E94 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX4Q33E94 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 AL136116.3-201ENST00000402907 1138 ntBASIC19.06■□□□□ 0.64
RFX4Q33E94 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX4Q33E94 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC19.06■□□□□ 0.64
RFX4Q33E94 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.06■□□□□ 0.64
RFX4Q33E94 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC19.06■□□□□ 0.64
RFX4Q33E94 SH3GL1-206ENST00000598564 2194 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX4Q33E94 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX4Q33E94 AL020996.1-203ENST00000536896 2307 ntBASIC19.06■□□□□ 0.64
RFX4Q33E94 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.06■□□□□ 0.64
RFX4Q33E94 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
RFX4Q33E94 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
RFX4Q33E94 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC19.05■□□□□ 0.64
RFX4Q33E94 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC19.05■□□□□ 0.64
RFX4Q33E94 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RFX4Q33E94 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.04■□□□□ 0.64
RFX4Q33E94 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.04■□□□□ 0.64
RFX4Q33E94 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
RFX4Q33E94 UNC93B3-201ENST00000308076 687 ntBASIC19.04■□□□□ 0.64
RFX4Q33E94 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC19.04■□□□□ 0.64
RFX4Q33E94 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC19.04■□□□□ 0.64
RFX4Q33E94 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
RFX4Q33E94 MIR4767-201ENST00000582827 78 ntBASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms