Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC15.1■□□□□ 0.01
PRKDCP78527 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC15.1■□□□□ 0.01
PRKDCP78527 IPPK-202ENST00000375522 882 ntTSL 3 BASIC15.1■□□□□ 0.01
PRKDCP78527 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC15.1■□□□□ 0.01
PRKDCP78527 AC079089.2-201ENST00000531211 1277 ntBASIC15.1■□□□□ 0.01
PRKDCP78527 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC15.1■□□□□ 0.01
PRKDCP78527 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PRKDCP78527 AC124283.5-201ENST00000624661 1809 ntBASIC15.09■□□□□ 0.01
PRKDCP78527 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC15.09■□□□□ 0.01
PRKDCP78527 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PRKDCP78527 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC15.09■□□□□ 0.01
PRKDCP78527 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
PRKDCP78527 AC073195.1-201ENST00000607241 877 ntBASIC15.09■□□□□ 0.01
PRKDCP78527 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC15.09■□□□□ 0.01
PRKDCP78527 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC15.09■□□□□ 0.01
PRKDCP78527 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PRKDCP78527 HCG4P8-203ENST00000443049 980 ntBASIC15.09■□□□□ 0.01
PRKDCP78527 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC15.09■□□□□ 0.01
PRKDCP78527 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC15.09■□□□□ 0.01
PRKDCP78527 CLN6-214ENST00000636314 442 ntTSL 3 BASIC15.09■□□□□ 0.01
PRKDCP78527 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.09■□□□□ 0.01
PRKDCP78527 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PRKDCP78527 MED17-227ENST00000640521 2047 ntTSL 5 BASIC15.09■□□□□ 0.01
PRKDCP78527 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
PRKDCP78527 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PRKDCP78527 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
PRKDCP78527 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
PRKDCP78527 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PRKDCP78527 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0.01
PRKDCP78527 AL121906.2-201ENST00000621597 723 ntBASIC15.08■□□□□ 0.01
PRKDCP78527 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC15.08■□□□□ 0.01
PRKDCP78527 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC15.08■□□□□ 0
PRKDCP78527 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PRKDCP78527 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC15.08■□□□□ 0
PRKDCP78527 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC15.08■□□□□ 0
PRKDCP78527 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC15.08■□□□□ 0
PRKDCP78527 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.08■□□□□ 0
PRKDCP78527 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.08■□□□□ 0
PRKDCP78527 FAM8A6P-201ENST00000407496 1135 ntBASIC15.08■□□□□ 0
PRKDCP78527 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC15.08■□□□□ 0
PRKDCP78527 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC15.08■□□□□ 0
PRKDCP78527 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC15.08■□□□□ 0
PRKDCP78527 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC15.07■□□□□ 0
PRKDCP78527 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
PRKDCP78527 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC15.07■□□□□ 0
PRKDCP78527 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC15.07■□□□□ 0
PRKDCP78527 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC15.07■□□□□ 0
PRKDCP78527 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC15.07■□□□□ 0
PRKDCP78527 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC15.07■□□□□ 0
PRKDCP78527 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC15.07■□□□□ 0
PRKDCP78527 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC15.07■□□□□ 0
PRKDCP78527 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC15.07■□□□□ 0
PRKDCP78527 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC15.07■□□□□ 0
PRKDCP78527 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC15.07■□□□□ 0
PRKDCP78527 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC15.07■□□□□ 0
PRKDCP78527 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC15.06■□□□□ 0
PRKDCP78527 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PRKDCP78527 NAPSB-206ENST00000562112 1266 ntBASIC15.06■□□□□ 0
PRKDCP78527 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC15.06■□□□□ 0
PRKDCP78527 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
PRKDCP78527 AC140479.4-201ENST00000561715 463 ntTSL 4 BASIC15.06■□□□□ 0
PRKDCP78527 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
PRKDCP78527 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC15.06■□□□□ 0
PRKDCP78527 MOK-233ENST00000524214 1539 ntTSL 2 BASIC15.06■□□□□ 0
PRKDCP78527 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC15.06■□□□□ 0
PRKDCP78527 KRT16P5-201ENST00000455284 522 ntBASIC15.06■□□□□ 0
PRKDCP78527 CLEC4GP1-201ENST00000596555 870 ntBASIC15.06■□□□□ 0
PRKDCP78527 AL671883.3-201ENST00000603274 991 ntBASIC15.06■□□□□ 0
PRKDCP78527 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 MED25-212ENST00000618715 1467 ntTSL 5 BASIC15.06■□□□□ 0
PRKDCP78527 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
PRKDCP78527 LTK-203ENST00000453182 2412 ntTSL 2 BASIC15.06■□□□□ 0
PRKDCP78527 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC15.05■□□□□ 0
PRKDCP78527 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PRKDCP78527 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
PRKDCP78527 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ 0
PRKDCP78527 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.05■□□□□ 0
PRKDCP78527 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.05■□□□□ 0
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms