Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
RNF4P78317 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
RNF4P78317 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
RNF4P78317 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC19.05■□□□□ 0.64
RNF4P78317 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC19.05■□□□□ 0.64
RNF4P78317 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC19.05■□□□□ 0.64
RNF4P78317 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC19.05■□□□□ 0.64
RNF4P78317 MCRIP2P1-201ENST00000394346 511 ntBASIC19.05■□□□□ 0.64
RNF4P78317 BX276092.2-201ENST00000417668 665 ntBASIC19.05■□□□□ 0.64
RNF4P78317 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.05■□□□□ 0.64
RNF4P78317 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC19.05■□□□□ 0.64
RNF4P78317 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
RNF4P78317 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 AC121338.2-201ENST00000622535 1744 ntBASIC19.05■□□□□ 0.64
RNF4P78317 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
RNF4P78317 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.05■□□□□ 0.64
RNF4P78317 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC19.05■□□□□ 0.64
RNF4P78317 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF4P78317 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF4P78317 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
RNF4P78317 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF4P78317 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC19.04■□□□□ 0.64
RNF4P78317 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC19.04■□□□□ 0.64
RNF4P78317 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.04■□□□□ 0.64
RNF4P78317 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF4P78317 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
RNF4P78317 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
RNF4P78317 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.03■□□□□ 0.64
RNF4P78317 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 AL355472.2-201ENST00000422958 438 ntBASIC19.03■□□□□ 0.64
RNF4P78317 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC19.03■□□□□ 0.64
RNF4P78317 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC19.03■□□□□ 0.64
RNF4P78317 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC19.03■□□□□ 0.64
RNF4P78317 MIR4758-201ENST00000577688 71 ntBASIC19.03■□□□□ 0.64
RNF4P78317 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.03■□□□□ 0.64
RNF4P78317 CYP2T3P-201ENST00000601990 817 ntBASIC19.03■□□□□ 0.64
RNF4P78317 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.03■□□□□ 0.64
RNF4P78317 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
RNF4P78317 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 CYP21A1P-202ENST00000354927 1481 ntBASIC19.03■□□□□ 0.64
RNF4P78317 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
RNF4P78317 PKD1P6-201ENST00000343738 4769 ntBASIC19.02■□□□□ 0.64
RNF4P78317 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.02■□□□□ 0.64
RNF4P78317 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF4P78317 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.02■□□□□ 0.64
RNF4P78317 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF4P78317 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.02■□□□□ 0.64
RNF4P78317 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.02■□□□□ 0.64
RNF4P78317 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF4P78317 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
RNF4P78317 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
RNF4P78317 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
RNF4P78317 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.02■□□□□ 0.64
RNF4P78317 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
RNF4P78317 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.02■□□□□ 0.63
RNF4P78317 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF4P78317 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.01■□□□□ 0.63
RNF4P78317 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 AC007375.3-201ENST00000600936 2314 ntBASIC19.01■□□□□ 0.63
RNF4P78317 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
RNF4P78317 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.01■□□□□ 0.63
RNF4P78317 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.01■□□□□ 0.63
RNF4P78317 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC19.01■□□□□ 0.63
RNF4P78317 AC092118.2-201ENST00000613495 667 ntBASIC19.01■□□□□ 0.63
RNF4P78317 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
RNF4P78317 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
RNF4P78317 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC19■□□□□ 0.63
RNF4P78317 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
RNF4P78317 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC19■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms