Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC22.69■■□□□ 1.22
PEX3P56589 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
PEX3P56589 MARS-234ENST00000630571 216 ntTSL 5 BASIC22.69■■□□□ 1.22
PEX3P56589 MARS-235ENST00000630803 183 ntTSL 3 BASIC22.69■■□□□ 1.22
PEX3P56589 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
PEX3P56589 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC22.69■■□□□ 1.22
PEX3P56589 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC22.68■■□□□ 1.22
PEX3P56589 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PEX3P56589 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC22.68■■□□□ 1.22
PEX3P56589 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
PEX3P56589 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PEX3P56589 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC22.68■■□□□ 1.22
PEX3P56589 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC22.68■■□□□ 1.22
PEX3P56589 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.68■■□□□ 1.22
PEX3P56589 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC22.68■■□□□ 1.22
PEX3P56589 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC22.68■■□□□ 1.22
PEX3P56589 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC22.68■■□□□ 1.22
PEX3P56589 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC22.68■■□□□ 1.22
PEX3P56589 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
PEX3P56589 GAMT-205ENST00000640762 751 ntTSL 5 BASIC22.68■■□□□ 1.22
PEX3P56589 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
PEX3P56589 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PEX3P56589 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PEX3P56589 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
PEX3P56589 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC22.68■■□□□ 1.22
PEX3P56589 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC22.68■■□□□ 1.22
PEX3P56589 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC22.67■■□□□ 1.22
PEX3P56589 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC22.67■■□□□ 1.22
PEX3P56589 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 SLC29A4P1-201ENST00000398760 971 ntBASIC22.67■■□□□ 1.22
PEX3P56589 AL355472.2-201ENST00000422958 438 ntBASIC22.67■■□□□ 1.22
PEX3P56589 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC22.67■■□□□ 1.22
PEX3P56589 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
PEX3P56589 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC22.67■■□□□ 1.22
PEX3P56589 CYP21A1P-202ENST00000354927 1481 ntBASIC22.66■■□□□ 1.22
PEX3P56589 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC22.66■■□□□ 1.22
PEX3P56589 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC22.66■■□□□ 1.22
PEX3P56589 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
PEX3P56589 STAC-204ENST00000457375 1366 ntTSL 2 BASIC22.66■■□□□ 1.22
PEX3P56589 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PEX3P56589 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
PEX3P56589 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC22.66■■□□□ 1.22
PEX3P56589 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC22.66■■□□□ 1.22
PEX3P56589 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC22.66■■□□□ 1.22
PEX3P56589 AC100791.3-201ENST00000617619 330 ntBASIC22.66■■□□□ 1.22
PEX3P56589 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.66■■□□□ 1.22
PEX3P56589 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PEX3P56589 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC22.66■■□□□ 1.22
PEX3P56589 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
PEX3P56589 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.65■■□□□ 1.22
PEX3P56589 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC22.65■■□□□ 1.22
PEX3P56589 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC22.65■■□□□ 1.22
PEX3P56589 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC22.65■■□□□ 1.22
PEX3P56589 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
PEX3P56589 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.22
PEX3P56589 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC22.64■■□□□ 1.22
PEX3P56589 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC22.64■■□□□ 1.22
PEX3P56589 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.22
PEX3P56589 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC22.64■■□□□ 1.22
PEX3P56589 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.22
PEX3P56589 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.64■■□□□ 1.21
PEX3P56589 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC22.64■■□□□ 1.21
PEX3P56589 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC22.64■■□□□ 1.21
PEX3P56589 MCRIP2P1-201ENST00000394346 511 ntBASIC22.64■■□□□ 1.21
PEX3P56589 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PEX3P56589 AL355802.2-201ENST00000402069 882 ntBASIC22.64■■□□□ 1.21
PEX3P56589 MIPEPP3-201ENST00000412105 444 ntBASIC22.64■■□□□ 1.21
PEX3P56589 ISCU-212ENST00000547005 795 ntTSL 3 BASIC22.64■■□□□ 1.21
PEX3P56589 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.64■■□□□ 1.21
PEX3P56589 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC22.64■■□□□ 1.21
PEX3P56589 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
PEX3P56589 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC22.64■■□□□ 1.21
PEX3P56589 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC22.64■■□□□ 1.21
PEX3P56589 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.64■■□□□ 1.21
PEX3P56589 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC22.64■■□□□ 1.21
PEX3P56589 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
PEX3P56589 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
PEX3P56589 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.64■■□□□ 1.21
PEX3P56589 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
PEX3P56589 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
PEX3P56589 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC22.63■■□□□ 1.21
PEX3P56589 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC22.63■■□□□ 1.21
PEX3P56589 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.63■■□□□ 1.21
PEX3P56589 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 147 ms