Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC011484.1-201ENST00000377652 1995 ntBASIC19.53■□□□□ 0.72
LIM2P55344 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.53■□□□□ 0.72
LIM2P55344 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.53■□□□□ 0.72
LIM2P55344 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
LIM2P55344 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
LIM2P55344 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 PLK5-205ENST00000642079 1969 ntBASIC19.52■□□□□ 0.72
LIM2P55344 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 AC007322.1-201ENST00000426983 750 ntBASIC19.52■□□□□ 0.72
LIM2P55344 MAZ-216ENST00000616501 991 ntTSL 5 BASIC19.52■□□□□ 0.72
LIM2P55344 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
LIM2P55344 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.52■□□□□ 0.72
LIM2P55344 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
LIM2P55344 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
LIM2P55344 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
LIM2P55344 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
LIM2P55344 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
LIM2P55344 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
LIM2P55344 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.52■□□□□ 0.71
LIM2P55344 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
LIM2P55344 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
LIM2P55344 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.51■□□□□ 0.71
LIM2P55344 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
LIM2P55344 AC007322.3-201ENST00000426526 701 ntBASIC19.51■□□□□ 0.71
LIM2P55344 CDV3P1-201ENST00000471403 739 ntBASIC19.51■□□□□ 0.71
LIM2P55344 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.51■□□□□ 0.71
LIM2P55344 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
LIM2P55344 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.51■□□□□ 0.71
LIM2P55344 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 AC068338.2-201ENST00000563278 1430 ntBASIC19.51■□□□□ 0.71
LIM2P55344 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
LIM2P55344 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.5■□□□□ 0.71
LIM2P55344 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
LIM2P55344 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.5■□□□□ 0.71
LIM2P55344 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
LIM2P55344 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.5■□□□□ 0.71
LIM2P55344 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
LIM2P55344 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 AL162412.1-201ENST00000567129 965 ntBASIC19.49■□□□□ 0.71
LIM2P55344 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.49■□□□□ 0.71
LIM2P55344 RAP2CP1-201ENST00000605103 478 ntBASIC19.49■□□□□ 0.71
LIM2P55344 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
LIM2P55344 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
LIM2P55344 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
LIM2P55344 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC19.49■□□□□ 0.71
LIM2P55344 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms