Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
MSX1P28360 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC18.82■□□□□ 0.6
MSX1P28360 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 AC007322.3-201ENST00000426526 701 ntBASIC18.82■□□□□ 0.6
MSX1P28360 MIR4651-201ENST00000582622 73 ntBASIC18.82■□□□□ 0.6
MSX1P28360 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.82■□□□□ 0.6
MSX1P28360 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC18.82■□□□□ 0.6
MSX1P28360 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
MSX1P28360 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
MSX1P28360 AC007375.3-201ENST00000600936 2314 ntBASIC18.82■□□□□ 0.6
MSX1P28360 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC18.81■□□□□ 0.6
MSX1P28360 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC18.81■□□□□ 0.6
MSX1P28360 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
MSX1P28360 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC18.81■□□□□ 0.6
MSX1P28360 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
MSX1P28360 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.81■□□□□ 0.6
MSX1P28360 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 AC105036.2-201ENST00000569468 176 ntBASIC18.81■□□□□ 0.6
MSX1P28360 FAM21FP-204ENST00000608637 956 ntBASIC18.81■□□□□ 0.6
MSX1P28360 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
MSX1P28360 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
MSX1P28360 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC18.81■□□□□ 0.6
MSX1P28360 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
MSX1P28360 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC18.8■□□□□ 0.6
MSX1P28360 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 FAM201B-201ENST00000458407 597 ntBASIC18.8■□□□□ 0.6
MSX1P28360 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
MSX1P28360 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.8■□□□□ 0.6
MSX1P28360 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.8■□□□□ 0.6
MSX1P28360 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC18.8■□□□□ 0.6
MSX1P28360 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 AC068338.2-201ENST00000563278 1430 ntBASIC18.8■□□□□ 0.6
MSX1P28360 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC18.8■□□□□ 0.6
MSX1P28360 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC18.8■□□□□ 0.6
MSX1P28360 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
MSX1P28360 AF106564.1-201ENST00000607058 2553 ntBASIC18.8■□□□□ 0.6
MSX1P28360 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
MSX1P28360 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
MSX1P28360 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
MSX1P28360 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
MSX1P28360 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.79■□□□□ 0.6
MSX1P28360 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC18.79■□□□□ 0.6
MSX1P28360 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
MSX1P28360 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC18.79■□□□□ 0.6
MSX1P28360 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC18.79■□□□□ 0.6
MSX1P28360 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
MSX1P28360 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC18.79■□□□□ 0.6
MSX1P28360 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC18.78■□□□□ 0.6
MSX1P28360 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC18.78■□□□□ 0.6
MSX1P28360 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.78■□□□□ 0.6
MSX1P28360 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
MSX1P28360 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.78■□□□□ 0.6
MSX1P28360 RPL29-209ENST00000495383 713 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
MSX1P28360 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC18.78■□□□□ 0.6
MSX1P28360 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC18.78■□□□□ 0.6
MSX1P28360 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
MSX1P28360 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms