Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
VCANP13611 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCANP13611 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
VCANP13611 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.5■■□□□ 1.03
VCANP13611 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VCANP13611 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.5■■□□□ 1.03
VCANP13611 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC21.5■■□□□ 1.03
VCANP13611 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
VCANP13611 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC21.5■■□□□ 1.03
VCANP13611 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.5■■□□□ 1.03
VCANP13611 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.5■■□□□ 1.03
VCANP13611 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.5■■□□□ 1.03
VCANP13611 AC120498.10-201ENST00000621827 505 ntBASIC21.5■■□□□ 1.03
VCANP13611 AL691432.3-201ENST00000621860 400 ntBASIC21.5■■□□□ 1.03
VCANP13611 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
VCANP13611 MIR1238-201ENST00000408483 83 ntBASIC21.5■■□□□ 1.03
VCANP13611 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCANP13611 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCANP13611 BET1L-202ENST00000332865 533 ntTSL 5 BASIC21.49■■□□□ 1.03
VCANP13611 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.49■■□□□ 1.03
VCANP13611 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC21.49■■□□□ 1.03
VCANP13611 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.49■■□□□ 1.03
VCANP13611 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCANP13611 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCANP13611 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCANP13611 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC21.49■■□□□ 1.03
VCANP13611 NDUFV2-AS1-203ENST00000608008 779 ntBASIC21.49■■□□□ 1.03
VCANP13611 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.49■■□□□ 1.03
VCANP13611 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
VCANP13611 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 FAM197Y1-201ENST00000421178 764 ntBASIC21.48■■□□□ 1.03
VCANP13611 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC21.48■■□□□ 1.03
VCANP13611 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC21.48■■□□□ 1.03
VCANP13611 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.48■■□□□ 1.03
VCANP13611 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.48■■□□□ 1.03
VCANP13611 RTCA-201ENST00000260563 1534 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
VCANP13611 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.48■■□□□ 1.03
VCANP13611 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.48■■□□□ 1.03
VCANP13611 AC010203.1-204ENST00000548782 407 ntBASIC21.48■■□□□ 1.03
VCANP13611 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC21.48■■□□□ 1.03
VCANP13611 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC21.48■■□□□ 1.03
VCANP13611 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.48■■□□□ 1.03
VCANP13611 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
VCANP13611 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC21.48■■□□□ 1.03
VCANP13611 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.47■■□□□ 1.03
VCANP13611 FDX2-207ENST00000494368 584 ntTSL 4 BASIC21.47■■□□□ 1.03
VCANP13611 AC063952.2-201ENST00000498792 1227 ntBASIC21.47■■□□□ 1.03
VCANP13611 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.47■■□□□ 1.03
VCANP13611 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
VCANP13611 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC21.47■■□□□ 1.03
VCANP13611 FDX1P1-201ENST00000449115 551 ntBASIC21.47■■□□□ 1.03
VCANP13611 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC21.47■■□□□ 1.03
VCANP13611 CLEC4GP1-201ENST00000596555 870 ntBASIC21.47■■□□□ 1.03
VCANP13611 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
VCANP13611 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC21.47■■□□□ 1.03
VCANP13611 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC21.47■■□□□ 1.03
VCANP13611 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC21.46■■□□□ 1.03
VCANP13611 LGALS8-AS1-201ENST00000487567 1457 ntBASIC21.46■■□□□ 1.03
VCANP13611 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
VCANP13611 FAM8A6P-201ENST00000407496 1135 ntBASIC21.46■■□□□ 1.03
VCANP13611 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.46■■□□□ 1.03
VCANP13611 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VCANP13611 AC138932.3-201ENST00000567634 1902 ntBASIC21.46■■□□□ 1.03
VCANP13611 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
VCANP13611 MCRIP2P1-201ENST00000394346 511 ntBASIC21.46■■□□□ 1.03
VCANP13611 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VCANP13611 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
VCANP13611 AC139530.3-201ENST00000620344 690 ntBASIC21.46■■□□□ 1.03
VCANP13611 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
VCANP13611 KRT8P10-201ENST00000450021 1447 ntBASIC21.46■■□□□ 1.03
VCANP13611 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC21.45■■□□□ 1.02
VCANP13611 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 AC020928.2-201ENST00000588717 2197 ntBASIC21.45■■□□□ 1.02
VCANP13611 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC21.45■■□□□ 1.02
VCANP13611 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
VCANP13611 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms