Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC22.59■■□□□ 1.21
TPM1P09493 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC22.59■■□□□ 1.21
TPM1P09493 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC22.59■■□□□ 1.21
TPM1P09493 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC22.59■■□□□ 1.21
TPM1P09493 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC22.59■■□□□ 1.21
TPM1P09493 AC055733.4-201ENST00000638462 1354 ntBASIC22.59■■□□□ 1.21
TPM1P09493 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
TPM1P09493 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC22.59■■□□□ 1.21
TPM1P09493 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TPM1P09493 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TPM1P09493 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
TPM1P09493 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TPM1P09493 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.21
TPM1P09493 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC22.58■■□□□ 1.21
TPM1P09493 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC22.58■■□□□ 1.21
TPM1P09493 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC22.58■■□□□ 1.21
TPM1P09493 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.58■■□□□ 1.21
TPM1P09493 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.58■■□□□ 1.21
TPM1P09493 AC233992.3-201ENST00000607491 485 ntBASIC22.58■■□□□ 1.21
TPM1P09493 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC22.58■■□□□ 1.21
TPM1P09493 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC22.58■■□□□ 1.21
TPM1P09493 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC22.58■■□□□ 1.2
TPM1P09493 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.2
TPM1P09493 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC22.58■■□□□ 1.2
TPM1P09493 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC22.57■■□□□ 1.2
TPM1P09493 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC22.57■■□□□ 1.2
TPM1P09493 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC22.57■■□□□ 1.2
TPM1P09493 PCDHAC2-203ENST00000615316 3011 ntBASIC22.57■■□□□ 1.2
TPM1P09493 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 PCBP4-212ENST00000484633 2009 ntTSL 5 BASIC22.57■■□□□ 1.2
TPM1P09493 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
TPM1P09493 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC22.57■■□□□ 1.2
TPM1P09493 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.57■■□□□ 1.2
TPM1P09493 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
TPM1P09493 IGHV3-19-201ENST00000521488 291 ntBASIC22.56■■□□□ 1.2
TPM1P09493 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.56■■□□□ 1.2
TPM1P09493 AICDA-202ENST00000537228 667 ntTSL 5 BASIC22.56■■□□□ 1.2
TPM1P09493 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC22.56■■□□□ 1.2
TPM1P09493 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC22.56■■□□□ 1.2
TPM1P09493 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC22.56■■□□□ 1.2
TPM1P09493 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
TPM1P09493 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC22.56■■□□□ 1.2
TPM1P09493 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 ME2-218ENST00000640965 2476 ntTSL 5 BASIC22.55■■□□□ 1.2
TPM1P09493 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
TPM1P09493 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
TPM1P09493 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 AC131281.2-201ENST00000520478 145 ntBASIC22.55■■□□□ 1.2
TPM1P09493 MIR4767-201ENST00000582827 78 ntBASIC22.55■■□□□ 1.2
TPM1P09493 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
TPM1P09493 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC22.55■■□□□ 1.2
TPM1P09493 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 DET1-207ENST00000564406 2315 ntTSL 2 BASIC22.55■■□□□ 1.2
TPM1P09493 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
TPM1P09493 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC22.55■■□□□ 1.2
TPM1P09493 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC22.54■■□□□ 1.2
TPM1P09493 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC22.54■■□□□ 1.2
TPM1P09493 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 RNF146-206ENST00000480444 843 ntTSL 2 BASIC22.54■■□□□ 1.2
TPM1P09493 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC22.54■■□□□ 1.2
TPM1P09493 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC22.54■■□□□ 1.2
TPM1P09493 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC22.54■■□□□ 1.2
TPM1P09493 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC22.54■■□□□ 1.2
TPM1P09493 AC005224.4-201ENST00000583262 1652 ntBASIC22.54■■□□□ 1.2
TPM1P09493 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
TPM1P09493 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC22.53■■□□□ 1.2
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms