Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL591742.1-201ENST00000604433 565 ntBASIC24.29■■□□□ 1.48
HMGB1P09429 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC24.29■■□□□ 1.48
HMGB1P09429 AC013268.1-206ENST00000638368 961 ntBASIC24.29■■□□□ 1.48
HMGB1P09429 AC112229.1-201ENST00000639295 961 ntBASIC24.29■■□□□ 1.48
HMGB1P09429 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC24.29■■□□□ 1.48
HMGB1P09429 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.29■■□□□ 1.48
HMGB1P09429 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
HMGB1P09429 AL157384.1-201ENST00000445995 2473 ntBASIC24.28■■□□□ 1.48
HMGB1P09429 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC24.28■■□□□ 1.48
HMGB1P09429 GABARAPL3-202ENST00000624044 1851 ntBASIC24.28■■□□□ 1.48
HMGB1P09429 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC24.28■■□□□ 1.48
HMGB1P09429 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HMGB1P09429 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
HMGB1P09429 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
HMGB1P09429 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC24.28■■□□□ 1.48
HMGB1P09429 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC24.28■■□□□ 1.48
HMGB1P09429 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC24.28■■□□□ 1.48
HMGB1P09429 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC24.28■■□□□ 1.48
HMGB1P09429 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.28■■□□□ 1.48
HMGB1P09429 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
HMGB1P09429 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC24.28■■□□□ 1.48
HMGB1P09429 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HMGB1P09429 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC24.28■■□□□ 1.48
HMGB1P09429 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HMGB1P09429 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
HMGB1P09429 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
HMGB1P09429 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGB1P09429 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.27■■□□□ 1.48
HMGB1P09429 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGB1P09429 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC24.27■■□□□ 1.48
HMGB1P09429 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC24.27■■□□□ 1.48
HMGB1P09429 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC24.27■■□□□ 1.48
HMGB1P09429 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC24.27■■□□□ 1.48
HMGB1P09429 MIR2861-201ENST00000636310 90 ntBASIC24.27■■□□□ 1.48
HMGB1P09429 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGB1P09429 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC24.27■■□□□ 1.48
HMGB1P09429 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGB1P09429 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
HMGB1P09429 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC24.26■■□□□ 1.47
HMGB1P09429 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC24.26■■□□□ 1.47
HMGB1P09429 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 ME3-201ENST00000323418 1068 ntTSL 5 BASIC24.26■■□□□ 1.47
HMGB1P09429 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC24.26■■□□□ 1.47
HMGB1P09429 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.26■■□□□ 1.47
HMGB1P09429 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC24.26■■□□□ 1.47
HMGB1P09429 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 MFSD11-216ENST00000590393 1141 ntBASIC24.26■■□□□ 1.47
HMGB1P09429 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 AC073314.1-201ENST00000568729 2216 ntBASIC24.26■■□□□ 1.47
HMGB1P09429 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC24.26■■□□□ 1.47
HMGB1P09429 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
HMGB1P09429 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC24.25■■□□□ 1.47
HMGB1P09429 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.25■■□□□ 1.47
HMGB1P09429 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC24.25■■□□□ 1.47
HMGB1P09429 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC24.25■■□□□ 1.47
HMGB1P09429 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
HMGB1P09429 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC24.25■■□□□ 1.47
HMGB1P09429 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC24.25■■□□□ 1.47
HMGB1P09429 FAM21FP-204ENST00000608637 956 ntBASIC24.25■■□□□ 1.47
HMGB1P09429 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC24.25■■□□□ 1.47
HMGB1P09429 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
HMGB1P09429 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
HMGB1P09429 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC24.24■■□□□ 1.47
HMGB1P09429 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC24.24■■□□□ 1.47
HMGB1P09429 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 LINC01006-201ENST00000333319 2292 ntBASIC24.24■■□□□ 1.47
HMGB1P09429 GAS2L1P2-201ENST00000436355 1356 ntBASIC24.24■■□□□ 1.47
HMGB1P09429 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC24.24■■□□□ 1.47
HMGB1P09429 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
HMGB1P09429 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
HMGB1P09429 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGB1P09429 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
HMGB1P09429 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC24.23■■□□□ 1.47
HMGB1P09429 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
HMGB1P09429 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC24.23■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms