Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.1■□□□□ 0.81
SIX3O95343 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SIX3O95343 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX3O95343 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX3O95343 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
SIX3O95343 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
SIX3O95343 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX3O95343 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX3O95343 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
SIX3O95343 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX3O95343 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
SIX3O95343 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC20.09■□□□□ 0.81
SIX3O95343 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
SIX3O95343 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
SIX3O95343 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 YBX1P1-201ENST00000445822 960 ntBASIC20.09■□□□□ 0.81
SIX3O95343 AC245052.3-201ENST00000450182 901 ntBASIC20.09■□□□□ 0.81
SIX3O95343 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.09■□□□□ 0.81
SIX3O95343 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.09■□□□□ 0.81
SIX3O95343 DUX4L2-201ENST00000561772 1275 ntBASIC20.09■□□□□ 0.81
SIX3O95343 CCDC92B-201ENST00000575506 885 ntBASIC20.09■□□□□ 0.81
SIX3O95343 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.09■□□□□ 0.81
SIX3O95343 AP001160.3-201ENST00000601484 763 ntBASIC20.09■□□□□ 0.81
SIX3O95343 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.09■□□□□ 0.81
SIX3O95343 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.09■□□□□ 0.81
SIX3O95343 DUX4L6-201ENST00000626483 1275 ntBASIC20.09■□□□□ 0.81
SIX3O95343 DUX4L1-201ENST00000627662 1275 ntBASIC20.09■□□□□ 0.81
SIX3O95343 DUX4L8-201ENST00000629013 1275 ntBASIC20.09■□□□□ 0.81
SIX3O95343 DUX4L3-201ENST00000630187 1275 ntBASIC20.09■□□□□ 0.81
SIX3O95343 DUX4L7-201ENST00000630678 1275 ntBASIC20.09■□□□□ 0.81
SIX3O95343 DUX4L5-201ENST00000630834 1275 ntBASIC20.09■□□□□ 0.81
SIX3O95343 AC112907.3-201ENST00000577781 2400 ntBASIC20.09■□□□□ 0.81
SIX3O95343 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.09■□□□□ 0.81
SIX3O95343 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.09■□□□□ 0.81
SIX3O95343 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
SIX3O95343 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
SIX3O95343 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX3O95343 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.08■□□□□ 0.81
SIX3O95343 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX3O95343 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
SIX3O95343 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SIX3O95343 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
SIX3O95343 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.08■□□□□ 0.81
SIX3O95343 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX3O95343 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.08■□□□□ 0.81
SIX3O95343 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.08■□□□□ 0.81
SIX3O95343 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
SIX3O95343 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX3O95343 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
SIX3O95343 ZNRF2P3-201ENST00000424200 374 ntBASIC20.08■□□□□ 0.81
SIX3O95343 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.08■□□□□ 0.81
SIX3O95343 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC20.08■□□□□ 0.81
SIX3O95343 AC120498.10-201ENST00000621827 505 ntBASIC20.08■□□□□ 0.81
SIX3O95343 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
SIX3O95343 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX3O95343 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.8
SIX3O95343 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX3O95343 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX3O95343 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX3O95343 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SIX3O95343 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
SIX3O95343 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
SIX3O95343 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.07■□□□□ 0.8
SIX3O95343 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX3O95343 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
SIX3O95343 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX3O95343 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.07■□□□□ 0.8
SIX3O95343 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.07■□□□□ 0.8
SIX3O95343 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX3O95343 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX3O95343 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
SIX3O95343 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC20.07■□□□□ 0.8
SIX3O95343 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.06■□□□□ 0.8
SIX3O95343 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX3O95343 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
SIX3O95343 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX3O95343 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
SIX3O95343 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX3O95343 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX3O95343 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX3O95343 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC20.06■□□□□ 0.8
SIX3O95343 KRT18P14-201ENST00000534205 1250 ntBASIC20.06■□□□□ 0.8
SIX3O95343 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
SIX3O95343 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC20.06■□□□□ 0.8
SIX3O95343 AC004854.2-201ENST00000608450 1441 ntBASIC20.06■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms