Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 ERF-202ENST00000440177 2032 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
LDB3O75112 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LDB3O75112 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.37■□□□□ 0.69
LDB3O75112 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LDB3O75112 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.36■□□□□ 0.69
LDB3O75112 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 AC090192.1-201ENST00000517740 490 ntBASIC19.36■□□□□ 0.69
LDB3O75112 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.36■□□□□ 0.69
LDB3O75112 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
LDB3O75112 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.36■□□□□ 0.69
LDB3O75112 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
LDB3O75112 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC19.36■□□□□ 0.69
LDB3O75112 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.35■□□□□ 0.69
LDB3O75112 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.35■□□□□ 0.69
LDB3O75112 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.35■□□□□ 0.69
LDB3O75112 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.35■□□□□ 0.69
LDB3O75112 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC19.35■□□□□ 0.69
LDB3O75112 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 AL050303.2-201ENST00000619798 666 ntBASIC19.35■□□□□ 0.69
LDB3O75112 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC19.35■□□□□ 0.69
LDB3O75112 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
LDB3O75112 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 AC006128.1-201ENST00000624704 1661 ntBASIC19.35■□□□□ 0.69
LDB3O75112 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC19.35■□□□□ 0.69
LDB3O75112 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
LDB3O75112 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
LDB3O75112 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.34■□□□□ 0.69
LDB3O75112 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.34■□□□□ 0.69
LDB3O75112 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.34■□□□□ 0.69
LDB3O75112 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 PBX1-209ENST00000485769 834 ntTSL 2 BASIC19.34■□□□□ 0.69
LDB3O75112 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.34■□□□□ 0.69
LDB3O75112 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC19.34■□□□□ 0.69
LDB3O75112 AL162412.1-201ENST00000567129 965 ntBASIC19.34■□□□□ 0.69
LDB3O75112 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC19.34■□□□□ 0.69
LDB3O75112 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
LDB3O75112 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC19.34■□□□□ 0.69
LDB3O75112 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
LDB3O75112 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC19.34■□□□□ 0.69
LDB3O75112 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
LDB3O75112 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
LDB3O75112 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC19.33■□□□□ 0.69
LDB3O75112 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LDB3O75112 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
LDB3O75112 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
LDB3O75112 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.33■□□□□ 0.68
LDB3O75112 AC006970.2-201ENST00000450065 779 ntBASIC19.33■□□□□ 0.68
LDB3O75112 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
LDB3O75112 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC19.33■□□□□ 0.68
LDB3O75112 FAM21FP-204ENST00000608637 956 ntBASIC19.33■□□□□ 0.68
LDB3O75112 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LDB3O75112 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.33■□□□□ 0.68
LDB3O75112 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
LDB3O75112 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC19.33■□□□□ 0.68
LDB3O75112 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.33■□□□□ 0.68
LDB3O75112 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
LDB3O75112 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
LDB3O75112 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.33■□□□□ 0.68
LDB3O75112 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.33■□□□□ 0.68
LDB3O75112 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms