Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC26.09■■□□□ 1.77
CACNA1FO60840 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC26.09■■□□□ 1.77
CACNA1FO60840 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC26.09■■□□□ 1.77
CACNA1FO60840 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
CACNA1FO60840 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
CACNA1FO60840 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC26.09■■□□□ 1.77
CACNA1FO60840 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC26.09■■□□□ 1.77
CACNA1FO60840 KRT18P6-201ENST00000555540 1265 ntBASIC26.09■■□□□ 1.77
CACNA1FO60840 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC26.09■■□□□ 1.77
CACNA1FO60840 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC26.09■■□□□ 1.77
CACNA1FO60840 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC26.09■■□□□ 1.77
CACNA1FO60840 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC26.08■■□□□ 1.77
CACNA1FO60840 INO80E-214ENST00000620599 515 ntTSL 2 BASIC26.08■■□□□ 1.77
CACNA1FO60840 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC26.08■■□□□ 1.77
CACNA1FO60840 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC26.08■■□□□ 1.77
CACNA1FO60840 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC26.08■■□□□ 1.77
CACNA1FO60840 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CACNA1FO60840 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.76
CACNA1FO60840 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
CACNA1FO60840 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC26.08■■□□□ 1.76
CACNA1FO60840 GATS-209ENST00000454084 1030 ntTSL 3 BASIC26.07■■□□□ 1.76
CACNA1FO60840 HES2-205ENST00000487437 968 ntTSL 3 BASIC26.07■■□□□ 1.76
CACNA1FO60840 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.07■■□□□ 1.76
CACNA1FO60840 AC133041.1-202ENST00000642053 222 ntBASIC26.07■■□□□ 1.76
CACNA1FO60840 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
CACNA1FO60840 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC26.07■■□□□ 1.76
CACNA1FO60840 AC027702.1-201ENST00000563810 1770 ntBASIC26.07■■□□□ 1.76
CACNA1FO60840 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CACNA1FO60840 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC26.07■■□□□ 1.76
CACNA1FO60840 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC26.07■■□□□ 1.76
CACNA1FO60840 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC26.07■■□□□ 1.76
CACNA1FO60840 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC26.07■■□□□ 1.76
CACNA1FO60840 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC26.07■■□□□ 1.76
CACNA1FO60840 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CACNA1FO60840 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
CACNA1FO60840 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC26.06■■□□□ 1.76
CACNA1FO60840 KRT8P36-201ENST00000489121 1440 ntBASIC26.06■■□□□ 1.76
CACNA1FO60840 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC26.06■■□□□ 1.76
CACNA1FO60840 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CACNA1FO60840 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC26.06■■□□□ 1.76
CACNA1FO60840 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC26.06■■□□□ 1.76
CACNA1FO60840 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC26.06■■□□□ 1.76
CACNA1FO60840 KLF13-207ENST00000560473 489 ntTSL 3 BASIC26.06■■□□□ 1.76
CACNA1FO60840 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC26.05■■□□□ 1.76
CACNA1FO60840 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
CACNA1FO60840 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC26.05■■□□□ 1.76
CACNA1FO60840 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC26.05■■□□□ 1.76
CACNA1FO60840 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC26.05■■□□□ 1.76
CACNA1FO60840 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
CACNA1FO60840 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CACNA1FO60840 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC26.05■■□□□ 1.76
CACNA1FO60840 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CACNA1FO60840 KRT18P68-201ENST00000392293 1000 ntBASIC26.05■■□□□ 1.76
CACNA1FO60840 AC060766.5-201ENST00000590539 871 ntBASIC26.05■■□□□ 1.76
CACNA1FO60840 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC26.05■■□□□ 1.76
CACNA1FO60840 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC26.05■■□□□ 1.76
CACNA1FO60840 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC26.05■■□□□ 1.76
CACNA1FO60840 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC26.04■■□□□ 1.76
CACNA1FO60840 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CACNA1FO60840 ERF-202ENST00000440177 2032 ntTSL 2 BASIC26.04■■□□□ 1.76
CACNA1FO60840 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CACNA1FO60840 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
CACNA1FO60840 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CACNA1FO60840 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC26.04■■□□□ 1.76
CACNA1FO60840 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC26.04■■□□□ 1.76
CACNA1FO60840 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC26.04■■□□□ 1.76
CACNA1FO60840 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
CACNA1FO60840 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
CACNA1FO60840 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC26.04■■□□□ 1.76
CACNA1FO60840 AL589743.5-201ENST00000616611 1050 ntBASIC26.04■■□□□ 1.76
CACNA1FO60840 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC26.03■■□□□ 1.76
CACNA1FO60840 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC26.03■■□□□ 1.76
CACNA1FO60840 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC26.03■■□□□ 1.76
CACNA1FO60840 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 UNC93B5-201ENST00000530315 699 ntBASIC26.03■■□□□ 1.76
CACNA1FO60840 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CACNA1FO60840 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CACNA1FO60840 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
Retrieved 100 of 98,524 protein–RNA pairs in 20.8 ms