Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC20.03■□□□□ 0.8
CDX4O14627 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.03■□□□□ 0.8
CDX4O14627 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.03■□□□□ 0.8
CDX4O14627 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.03■□□□□ 0.8
CDX4O14627 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.03■□□□□ 0.8
CDX4O14627 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.03■□□□□ 0.8
CDX4O14627 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.03■□□□□ 0.8
CDX4O14627 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC20.03■□□□□ 0.8
CDX4O14627 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX4O14627 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.03■□□□□ 0.8
CDX4O14627 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX4O14627 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX4O14627 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDX4O14627 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDX4O14627 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CDX4O14627 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.02■□□□□ 0.8
CDX4O14627 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC20.02■□□□□ 0.8
CDX4O14627 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CDX4O14627 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.02■□□□□ 0.8
CDX4O14627 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDX4O14627 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.02■□□□□ 0.8
CDX4O14627 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CDX4O14627 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CDX4O14627 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC20.02■□□□□ 0.8
CDX4O14627 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDX4O14627 SNX21-201ENST00000342644 1506 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDX4O14627 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.02■□□□□ 0.79
CDX4O14627 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDX4O14627 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDX4O14627 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.01■□□□□ 0.79
CDX4O14627 LMAN1L-202ENST00000379709 1699 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDX4O14627 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDX4O14627 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
CDX4O14627 TPM1-226ENST00000560959 925 ntTSL 2 BASIC20.01■□□□□ 0.79
CDX4O14627 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.01■□□□□ 0.79
CDX4O14627 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC20.01■□□□□ 0.79
CDX4O14627 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDX4O14627 AC010542.4-201ENST00000563151 1910 ntBASIC20.01■□□□□ 0.79
CDX4O14627 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CDX4O14627 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CDX4O14627 AC087633.2-202ENST00000565166 1439 ntBASIC20.01■□□□□ 0.79
CDX4O14627 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20■□□□□ 0.79
CDX4O14627 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CDX4O14627 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC20■□□□□ 0.79
CDX4O14627 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20■□□□□ 0.79
CDX4O14627 AL355355.2-201ENST00000442321 338 ntBASIC20■□□□□ 0.79
CDX4O14627 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20■□□□□ 0.79
CDX4O14627 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20■□□□□ 0.79
CDX4O14627 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC20■□□□□ 0.79
CDX4O14627 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC20■□□□□ 0.79
CDX4O14627 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20■□□□□ 0.79
CDX4O14627 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20■□□□□ 0.79
CDX4O14627 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CDX4O14627 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CDX4O14627 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20■□□□□ 0.79
CDX4O14627 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20■□□□□ 0.79
CDX4O14627 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC19.99■□□□□ 0.79
CDX4O14627 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.99■□□□□ 0.79
CDX4O14627 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.99■□□□□ 0.79
CDX4O14627 MOK-233ENST00000524214 1539 ntTSL 2 BASIC19.99■□□□□ 0.79
CDX4O14627 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC19.99■□□□□ 0.79
CDX4O14627 RER1-204ENST00000378518 522 ntTSL 3 BASIC19.99■□□□□ 0.79
CDX4O14627 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC19.99■□□□□ 0.79
CDX4O14627 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC19.99■□□□□ 0.79
CDX4O14627 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CDX4O14627 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CDX4O14627 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDX4O14627 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDX4O14627 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CDX4O14627 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.98■□□□□ 0.79
CDX4O14627 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDX4O14627 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.98■□□□□ 0.79
CDX4O14627 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CDX4O14627 AL390719.1-204ENST00000412397 1219 ntBASIC19.98■□□□□ 0.79
CDX4O14627 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.98■□□□□ 0.79
CDX4O14627 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC19.98■□□□□ 0.79
CDX4O14627 P4HB-223ENST00000576390 439 ntTSL 4 BASIC19.98■□□□□ 0.79
CDX4O14627 AF186192.3-201ENST00000583427 947 ntBASIC19.98■□□□□ 0.79
CDX4O14627 AC145285.6-201ENST00000604632 637 ntBASIC19.98■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms