Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
NPIPA2E9PIF3 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
NPIPA2E9PIF3 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 AC097658.1-201ENST00000475555 843 ntBASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
NPIPA2E9PIF3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 AC091799.1-201ENST00000422823 811 ntBASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 CDV3P1-201ENST00000471403 739 ntBASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
NPIPA2E9PIF3 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 CERS4-209ENST00000559450 1637 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 RHEB-204ENST00000472642 900 ntTSL 3 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
NPIPA2E9PIF3 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 LSM12P1-201ENST00000411836 588 ntBASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 DUSP5P2-201ENST00000426873 1033 ntBASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 CASP6-205ENST00000505486 538 ntTSL 4 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NPIPA2E9PIF3 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.69■□□□□ 0.58
NPIPA2E9PIF3 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms