Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 LINC02228-203ENST00000641970 1355 ntBASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 AC099778.1-201ENST00000568593 1911 ntBASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC20.94■□□□□ 0.94
TCRBV7S3A2A0A539 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
TCRBV7S3A2A0A539 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
TCRBV7S3A2A0A539 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 TERF1P2-201ENST00000583350 1212 ntBASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 AP001160.3-201ENST00000601484 763 ntBASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
TCRBV7S3A2A0A539 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 AC245052.3-201ENST00000450182 901 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4L2-201ENST00000561772 1275 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4L6-201ENST00000626483 1275 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4L1-201ENST00000627662 1275 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4L8-201ENST00000629013 1275 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4L3-201ENST00000630187 1275 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4L7-201ENST00000630678 1275 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DUX4L5-201ENST00000630834 1275 ntBASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
TCRBV7S3A2A0A539 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TCRBV7S3A2A0A539 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
TCRBV7S3A2A0A539 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
TCRBV7S3A2A0A539 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
TCRBV7S3A2A0A539 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TCRBV7S3A2A0A539 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms