Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.6■□□□□ 0.57
HIF3AQ9Y2N7 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 AC245052.3-201ENST00000450182 901 ntBASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.59■□□□□ 0.57
HIF3AQ9Y2N7 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.57
HIF3AQ9Y2N7 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HIF3AQ9Y2N7 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
HIF3AQ9Y2N7 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
HIF3AQ9Y2N7 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 AC092667.1-201ENST00000434301 2586 ntBASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 AC027702.1-201ENST00000563810 1770 ntBASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
HIF3AQ9Y2N7 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 CCDC92B-201ENST00000575506 885 ntBASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 AP001160.3-201ENST00000601484 763 ntBASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC18.57■□□□□ 0.56
HIF3AQ9Y2N7 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 KRT18P14-201ENST00000534205 1250 ntBASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 KRT18P20-201ENST00000548986 1279 ntBASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 FP700111.2-201ENST00000619190 1892 ntBASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.56■□□□□ 0.56
HIF3AQ9Y2N7 STAC-204ENST00000457375 1366 ntTSL 2 BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 TESC-206ENST00000541210 936 ntTSL 3 BASIC18.55■□□□□ 0.56
HIF3AQ9Y2N7 SLC7A5P2-201ENST00000553010 536 ntBASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms