Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 SLC29A4P1-201ENST00000398760 971 ntBASIC20.84■□□□□ 0.93
LHX3Q9UBR4 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 AL138781.1-201ENST00000566567 1274 ntBASIC20.84■□□□□ 0.93
LHX3Q9UBR4 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
LHX3Q9UBR4 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 PLK5-205ENST00000642079 1969 ntBASIC20.83■□□□□ 0.93
LHX3Q9UBR4 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20.83■□□□□ 0.93
LHX3Q9UBR4 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
LHX3Q9UBR4 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.83■□□□□ 0.92
LHX3Q9UBR4 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 MCRIP2P1-201ENST00000394346 511 ntBASIC20.82■□□□□ 0.92
LHX3Q9UBR4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 AL355802.2-201ENST00000402069 882 ntBASIC20.82■□□□□ 0.92
LHX3Q9UBR4 MIPEPP3-201ENST00000412105 444 ntBASIC20.82■□□□□ 0.92
LHX3Q9UBR4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 AC098934.4-201ENST00000564127 592 ntBASIC20.82■□□□□ 0.92
LHX3Q9UBR4 AC142086.2-201ENST00000569753 217 ntBASIC20.82■□□□□ 0.92
LHX3Q9UBR4 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 CYP2T3P-201ENST00000601990 817 ntBASIC20.82■□□□□ 0.92
LHX3Q9UBR4 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 STAC-204ENST00000457375 1366 ntTSL 2 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.82■□□□□ 0.92
LHX3Q9UBR4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 BX276092.2-201ENST00000417668 665 ntBASIC20.81■□□□□ 0.92
LHX3Q9UBR4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.81■□□□□ 0.92
LHX3Q9UBR4 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 KRT17P1-201ENST00000399211 1546 ntBASIC20.8■□□□□ 0.92
LHX3Q9UBR4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
LHX3Q9UBR4 AL137060.1-201ENST00000618151 2648 ntBASIC20.8■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms