Protein–RNA interactions for Protein: Q9NY35

CLDND1, Claudin domain-containing protein 1, humanhuman

Predictions only

Length 253 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDND1Q9NY35 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLDND1Q9NY35 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 AL353708.3-201ENST00000610272 989 ntBASIC21.68■■□□□ 1.06
CLDND1Q9NY35 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLDND1Q9NY35 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 AL049597.2-201ENST00000565575 961 ntBASIC21.67■■□□□ 1.06
CLDND1Q9NY35 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 AC026471.5-201ENST00000615068 467 ntBASIC21.67■■□□□ 1.06
CLDND1Q9NY35 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.67■■□□□ 1.06
CLDND1Q9NY35 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 GCA-201ENST00000233612 1694 ntTSL 2 BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
CLDND1Q9NY35 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 AC005829.2-201ENST00000571422 1056 ntBASIC21.65■■□□□ 1.06
CLDND1Q9NY35 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLDND1Q9NY35 NFE2L3P1-201ENST00000588207 1959 ntBASIC21.65■■□□□ 1.06
CLDND1Q9NY35 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLDND1Q9NY35 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC21.64■■□□□ 1.06
CLDND1Q9NY35 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLDND1Q9NY35 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLDND1Q9NY35 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
CLDND1Q9NY35 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLDND1Q9NY35 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 MMP23A-201ENST00000234610 1017 ntBASIC21.64■■□□□ 1.05
CLDND1Q9NY35 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 SERP1-205ENST00000487153 657 ntTSL 4 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 AP003071.4-201ENST00000562276 1284 ntBASIC21.64■■□□□ 1.05
CLDND1Q9NY35 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 AL590326.2-201ENST00000625139 305 ntBASIC21.64■■□□□ 1.05
CLDND1Q9NY35 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.64■■□□□ 1.05
CLDND1Q9NY35 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDND1Q9NY35 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLDND1Q9NY35 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms