Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
DDX28Q9NUL7 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
DDX28Q9NUL7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 AC026471.6-201ENST00000622954 1905 ntBASIC18.76■□□□□ 0.59
DDX28Q9NUL7 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 SREBF2-201ENST00000361204 5240 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 AC233992.3-201ENST00000607491 485 ntBASIC18.76■□□□□ 0.59
DDX28Q9NUL7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.76■□□□□ 0.59
DDX28Q9NUL7 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 PDE1C-206ENST00000396193 5109 ntAPPRIS P4 TSL 2 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC18.75■□□□□ 0.59
DDX28Q9NUL7 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 AC142381.2-201ENST00000566120 298 ntBASIC18.74■□□□□ 0.59
DDX28Q9NUL7 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
DDX28Q9NUL7 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 AC106739.1-201ENST00000617035 715 ntBASIC18.73■□□□□ 0.59
DDX28Q9NUL7 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DDX28Q9NUL7 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
DDX28Q9NUL7 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms