Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
DDX4Q9NQI0 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
DDX4Q9NQI0 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 KLF2-202ENST00000592003 564 ntTSL 3 BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC24.48■■□□□ 1.51
DDX4Q9NQI0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 MAMSTR-202ENST00000356751 1825 ntTSL 2 BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 AC087633.2-202ENST00000565166 1439 ntBASIC24.47■■□□□ 1.51
DDX4Q9NQI0 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 PEX7-202ENST00000367756 680 ntTSL 3 BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 SOX15-203ENST00000570788 1093 ntBASIC24.47■■□□□ 1.51
DDX4Q9NQI0 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC24.47■■□□□ 1.51
DDX4Q9NQI0 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 CRK-204ENST00000574295 1391 ntTSL 5 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 AL359736.2-201ENST00000621992 437 ntBASIC24.46■■□□□ 1.51
DDX4Q9NQI0 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
DDX4Q9NQI0 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC24.45■■□□□ 1.51
DDX4Q9NQI0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC24.45■■□□□ 1.51
DDX4Q9NQI0 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
DDX4Q9NQI0 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC24.45■■□□□ 1.51
DDX4Q9NQI0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.45■■□□□ 1.51
DDX4Q9NQI0 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 C2orf69P4-201ENST00000565394 541 ntBASIC24.45■■□□□ 1.5
DDX4Q9NQI0 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
DDX4Q9NQI0 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 HES2-205ENST00000487437 968 ntTSL 3 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 REXO2-208ENST00000539754 791 ntTSL 2 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
DDX4Q9NQI0 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms