Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
CHMP1AQ9HD42 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 FAM46A-203ENST00000369756 5537 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 MIR4767-201ENST00000582827 78 ntBASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 SMUG1P1-201ENST00000590640 811 ntBASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CHMP1AQ9HD42 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 UNC93B3-201ENST00000308076 687 ntBASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CHMP1AQ9HD42 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.64■□□□□ 0.42
CHMP1AQ9HD42 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CHMP1AQ9HD42 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC17.64■□□□□ 0.42
CHMP1AQ9HD42 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.42
CHMP1AQ9HD42 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CHMP1AQ9HD42 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 ASL-203ENST00000380839 1765 ntTSL 5 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 AC233992.3-201ENST00000607491 485 ntBASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CHMP1AQ9HD42 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 NARF-205ENST00000412079 1760 ntTSL 5 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CHMP1AQ9HD42 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CHMP1AQ9HD42 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms