Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.11■□□□□ 0.49
LIME1Q9H400 AC073648.6-201ENST00000641589 218 ntBASIC18.11■□□□□ 0.49
LIME1Q9H400 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC18.11■□□□□ 0.49
LIME1Q9H400 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.11■□□□□ 0.49
LIME1Q9H400 OR7E47P-201ENST00000546390 1422 ntBASIC18.11■□□□□ 0.49
LIME1Q9H400 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
LIME1Q9H400 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.1■□□□□ 0.49
LIME1Q9H400 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC18.1■□□□□ 0.49
LIME1Q9H400 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.1■□□□□ 0.49
LIME1Q9H400 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.1■□□□□ 0.49
LIME1Q9H400 SLC25A24-204ENST00000569674 2357 ntBASIC18.1■□□□□ 0.49
LIME1Q9H400 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.1■□□□□ 0.49
LIME1Q9H400 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
LIME1Q9H400 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.09■□□□□ 0.49
LIME1Q9H400 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.09■□□□□ 0.49
LIME1Q9H400 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC18.09■□□□□ 0.49
LIME1Q9H400 AC026366.1-201ENST00000488803 879 ntBASIC18.09■□□□□ 0.49
LIME1Q9H400 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC18.09■□□□□ 0.49
LIME1Q9H400 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.09■□□□□ 0.49
LIME1Q9H400 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.09■□□□□ 0.49
LIME1Q9H400 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
LIME1Q9H400 AP006587.3-201ENST00000525742 1516 ntBASIC18.08■□□□□ 0.49
LIME1Q9H400 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC18.08■□□□□ 0.49
LIME1Q9H400 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIME1Q9H400 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.49
LIME1Q9H400 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
LIME1Q9H400 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
LIME1Q9H400 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
LIME1Q9H400 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC18.08■□□□□ 0.48
LIME1Q9H400 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
LIME1Q9H400 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
LIME1Q9H400 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.08■□□□□ 0.48
LIME1Q9H400 UNC93B5-201ENST00000530315 699 ntBASIC18.08■□□□□ 0.48
LIME1Q9H400 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.08■□□□□ 0.48
LIME1Q9H400 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC18.08■□□□□ 0.48
LIME1Q9H400 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIME1Q9H400 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.08■□□□□ 0.48
LIME1Q9H400 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
LIME1Q9H400 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIME1Q9H400 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIME1Q9H400 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
LIME1Q9H400 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
LIME1Q9H400 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.07■□□□□ 0.48
LIME1Q9H400 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LIME1Q9H400 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LIME1Q9H400 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.07■□□□□ 0.48
LIME1Q9H400 AC008550.1-201ENST00000511500 884 ntBASIC18.07■□□□□ 0.48
LIME1Q9H400 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC18.07■□□□□ 0.48
LIME1Q9H400 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.07■□□□□ 0.48
LIME1Q9H400 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
LIME1Q9H400 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC18.07■□□□□ 0.48
LIME1Q9H400 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC18.07■□□□□ 0.48
LIME1Q9H400 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
LIME1Q9H400 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
LIME1Q9H400 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.07■□□□□ 0.48
LIME1Q9H400 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
LIME1Q9H400 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
LIME1Q9H400 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIME1Q9H400 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
LIME1Q9H400 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
LIME1Q9H400 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.06■□□□□ 0.48
LIME1Q9H400 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.06■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms