Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 AC012618.2-201ENST00000428058 849 ntBASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 MTDHP1-201ENST00000605323 784 ntBASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 AC087633.2-202ENST00000565166 1439 ntBASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
UPF3AQ9H1J1 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC23.05■■□□□ 1.28
UPF3AQ9H1J1 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
UPF3AQ9H1J1 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 SERF2-207ENST00000409614 582 ntTSL 2 BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 ECEL1P3-201ENST00000427961 737 ntBASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 AC133681.1-201ENST00000465482 601 ntBASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 AC233702.5-201ENST00000584107 538 ntBASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC23.03■■□□□ 1.28
UPF3AQ9H1J1 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 C1orf229-201ENST00000623686 2258 ntBASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
UPF3AQ9H1J1 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 AC211429.1-201ENST00000415277 523 ntBASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 AC124016.1-201ENST00000609552 612 ntBASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 REXO1L12P-201ENST00000622156 912 ntBASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
UPF3AQ9H1J1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
UPF3AQ9H1J1 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
UPF3AQ9H1J1 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 20 ms