Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC25.86■■□□□ 1.73
USP44Q9H0E7 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC25.86■■□□□ 1.73
USP44Q9H0E7 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC25.86■■□□□ 1.73
USP44Q9H0E7 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC25.86■■□□□ 1.73
USP44Q9H0E7 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC25.86■■□□□ 1.73
USP44Q9H0E7 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC25.86■■□□□ 1.73
USP44Q9H0E7 CYP21A1P-202ENST00000354927 1481 ntBASIC25.85■■□□□ 1.73
USP44Q9H0E7 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC25.85■■□□□ 1.73
USP44Q9H0E7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP44Q9H0E7 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC25.85■■□□□ 1.73
USP44Q9H0E7 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
USP44Q9H0E7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC25.85■■□□□ 1.73
USP44Q9H0E7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP44Q9H0E7 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP44Q9H0E7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
USP44Q9H0E7 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC25.85■■□□□ 1.73
USP44Q9H0E7 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP44Q9H0E7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
USP44Q9H0E7 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC25.85■■□□□ 1.73
USP44Q9H0E7 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP44Q9H0E7 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USP44Q9H0E7 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USP44Q9H0E7 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USP44Q9H0E7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP44Q9H0E7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USP44Q9H0E7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 SLC29A4P1-201ENST00000398760 971 ntBASIC25.84■■□□□ 1.73
USP44Q9H0E7 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 AC098934.4-201ENST00000564127 592 ntBASIC25.84■■□□□ 1.73
USP44Q9H0E7 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC25.84■■□□□ 1.73
USP44Q9H0E7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP44Q9H0E7 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC25.83■■□□□ 1.73
USP44Q9H0E7 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC25.83■■□□□ 1.73
USP44Q9H0E7 AL355802.2-201ENST00000402069 882 ntBASIC25.83■■□□□ 1.73
USP44Q9H0E7 BX276092.2-201ENST00000417668 665 ntBASIC25.83■■□□□ 1.73
USP44Q9H0E7 CYP2T3P-201ENST00000601990 817 ntBASIC25.83■■□□□ 1.73
USP44Q9H0E7 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC25.83■■□□□ 1.73
USP44Q9H0E7 KRT17P1-201ENST00000399211 1546 ntBASIC25.83■■□□□ 1.72
USP44Q9H0E7 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC25.83■■□□□ 1.72
USP44Q9H0E7 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC25.82■■□□□ 1.72
USP44Q9H0E7 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 MCRIP2P1-201ENST00000394346 511 ntBASIC25.82■■□□□ 1.72
USP44Q9H0E7 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC25.82■■□□□ 1.72
USP44Q9H0E7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC25.82■■□□□ 1.72
USP44Q9H0E7 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC25.82■■□□□ 1.72
USP44Q9H0E7 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP44Q9H0E7 ERF-202ENST00000440177 2032 ntTSL 2 BASIC25.81■■□□□ 1.72
USP44Q9H0E7 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC25.81■■□□□ 1.72
USP44Q9H0E7 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC25.81■■□□□ 1.72
USP44Q9H0E7 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC25.81■■□□□ 1.72
USP44Q9H0E7 PFKL-212ENST00000628044 129 ntTSL 3 BASIC25.81■■□□□ 1.72
USP44Q9H0E7 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP44Q9H0E7 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP44Q9H0E7 AC027702.1-201ENST00000563810 1770 ntBASIC25.8■■□□□ 1.72
USP44Q9H0E7 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP44Q9H0E7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP44Q9H0E7 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP44Q9H0E7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP44Q9H0E7 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP44Q9H0E7 PALM-208ENST00000592155 2272 ntTSL 4 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 GCK-205ENST00000437084 1385 ntTSL 5 BASIC25.8■■□□□ 1.72
USP44Q9H0E7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP44Q9H0E7 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC25.79■■□□□ 1.72
USP44Q9H0E7 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP44Q9H0E7 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP44Q9H0E7 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP44Q9H0E7 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC25.79■■□□□ 1.72
USP44Q9H0E7 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP44Q9H0E7 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC25.79■■□□□ 1.72
USP44Q9H0E7 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC25.79■■□□□ 1.72
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms