Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 METTL23-204ENST00000586752 904 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VPS13AQ96RL7 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 HES2-206ENST00000489730 730 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 AC008175.2-201ENST00000612840 297 ntBASIC20.6■□□□□ 0.89
VPS13AQ96RL7 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 AC087633.2-202ENST00000565166 1439 ntBASIC20.6■□□□□ 0.89
VPS13AQ96RL7 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 VMO1-204ENST00000441199 741 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 AC087742.1-201ENST00000575880 1738 ntBASIC20.6■□□□□ 0.89
VPS13AQ96RL7 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VPS13AQ96RL7 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 MCRIP2P1-201ENST00000394346 511 ntBASIC20.59■□□□□ 0.89
VPS13AQ96RL7 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 DUX4L26-201ENST00000489078 1255 ntBASIC20.59■□□□□ 0.89
VPS13AQ96RL7 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 C9orf163-202ENST00000624034 2573 ntBASIC20.59■□□□□ 0.89
VPS13AQ96RL7 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VPS13AQ96RL7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 DUSP5P1-201ENST00000441325 1139 ntBASIC20.58■□□□□ 0.89
VPS13AQ96RL7 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.58■□□□□ 0.89
VPS13AQ96RL7 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS13AQ96RL7 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS13AQ96RL7 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 DYNLL1-205ENST00000548342 662 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 KRT126P-201ENST00000549467 1181 ntBASIC20.56■□□□□ 0.88
VPS13AQ96RL7 TGIF1-222ENST00000577543 729 ntTSL 3 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.56■□□□□ 0.88
VPS13AQ96RL7 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS13AQ96RL7 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 MMP23A-201ENST00000234610 1017 ntBASIC20.55■□□□□ 0.88
VPS13AQ96RL7 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS13AQ96RL7 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 15.6 ms