Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 OR10C1-204ENST00000622521 1039 ntBASIC20.48■□□□□ 0.87
VPS35Q96QK1 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
VPS35Q96QK1 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.48■□□□□ 0.87
VPS35Q96QK1 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.48■□□□□ 0.87
VPS35Q96QK1 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 RARRES2P4-201ENST00000514074 484 ntBASIC20.47■□□□□ 0.87
VPS35Q96QK1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.47■□□□□ 0.87
VPS35Q96QK1 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
VPS35Q96QK1 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS35Q96QK1 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS35Q96QK1 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.46■□□□□ 0.87
VPS35Q96QK1 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC20.46■□□□□ 0.87
VPS35Q96QK1 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.46■□□□□ 0.87
VPS35Q96QK1 AC008694.1-202ENST00000636953 945 ntBASIC20.46■□□□□ 0.87
VPS35Q96QK1 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS35Q96QK1 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS35Q96QK1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
VPS35Q96QK1 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.46■□□□□ 0.87
VPS35Q96QK1 AC011484.1-201ENST00000377652 1995 ntBASIC20.45■□□□□ 0.86
VPS35Q96QK1 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS35Q96QK1 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
VPS35Q96QK1 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
VPS35Q96QK1 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS35Q96QK1 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS35Q96QK1 NCF1B-203ENST00000435988 1254 ntBASIC20.45■□□□□ 0.86
VPS35Q96QK1 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS35Q96QK1 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS35Q96QK1 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC20.45■□□□□ 0.86
VPS35Q96QK1 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS35Q96QK1 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS35Q96QK1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.45■□□□□ 0.86
VPS35Q96QK1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.45■□□□□ 0.86
VPS35Q96QK1 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
VPS35Q96QK1 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 AL512625.2-201ENST00000417533 625 ntBASIC20.44■□□□□ 0.86
VPS35Q96QK1 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 AF106564.1-201ENST00000607058 2553 ntBASIC20.44■□□□□ 0.86
VPS35Q96QK1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
VPS35Q96QK1 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
VPS35Q96QK1 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.43■□□□□ 0.86
VPS35Q96QK1 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
VPS35Q96QK1 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.43■□□□□ 0.86
VPS35Q96QK1 AC007375.3-201ENST00000600936 2314 ntBASIC20.43■□□□□ 0.86
VPS35Q96QK1 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.43■□□□□ 0.86
VPS35Q96QK1 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
VPS35Q96QK1 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.43■□□□□ 0.86
VPS35Q96QK1 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC20.43■□□□□ 0.86
VPS35Q96QK1 AL121832.2-201ENST00000610979 668 ntBASIC20.43■□□□□ 0.86
VPS35Q96QK1 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
VPS35Q96QK1 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
VPS35Q96QK1 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS35Q96QK1 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
VPS35Q96QK1 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms