Protein–RNA interactions for Protein: Q96DC8

ECHDC3, Enoyl-CoA hydratase domain-containing protein 3, mitochondrial, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC3Q96DC8 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 MCRIP2P1-201ENST00000394346 511 ntBASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 AL138781.1-201ENST00000566567 1274 ntBASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.69■□□□□ 0.9
ECHDC3Q96DC8 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 AL355802.2-201ENST00000402069 882 ntBASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 ISCU-212ENST00000547005 795 ntTSL 3 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 CYP2T3P-201ENST00000601990 817 ntBASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 PKMYT1-213ENST00000574385 1892 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
ECHDC3Q96DC8 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 AC073210.2-201ENST00000430369 194 ntBASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
ECHDC3Q96DC8 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 AC092118.2-201ENST00000613495 667 ntBASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 AC121338.2-201ENST00000622535 1744 ntBASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
ECHDC3Q96DC8 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 PRMT2-210ENST00000458387 1874 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 BX276092.2-201ENST00000417668 665 ntBASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 AL355472.2-201ENST00000422958 438 ntBASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 AC007375.3-201ENST00000600936 2314 ntBASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.65■□□□□ 0.9
ECHDC3Q96DC8 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.9
ECHDC3Q96DC8 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.64■□□□□ 0.9
ECHDC3Q96DC8 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
ECHDC3Q96DC8 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
ECHDC3Q96DC8 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 MIR4758-201ENST00000577688 71 ntBASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.64■□□□□ 0.89
ECHDC3Q96DC8 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC20.64■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms