Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC16.47■□□□□ 0.23
CLRN3Q8NCR9 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 TP53RK-201ENST00000372102 2012 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 AL162377.1-201ENST00000618844 1793 ntBASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
CLRN3Q8NCR9 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC16.46■□□□□ 0.22
CLRN3Q8NCR9 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC16.46■□□□□ 0.22
CLRN3Q8NCR9 MAPKAP1-205ENST00000373503 3045 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
CLRN3Q8NCR9 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 AC099778.1-201ENST00000568593 1911 ntBASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
CLRN3Q8NCR9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 AC018470.1-201ENST00000624790 3129 ntBASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 AC020763.4-201ENST00000623414 4170 ntBASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 AC026471.6-201ENST00000622954 1905 ntBASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 AL139384.1-201ENST00000612143 3047 ntBASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLRN3Q8NCR9 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
CLRN3Q8NCR9 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms