Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 TMEM11-201ENST00000317635 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 MIR663A-201ENST00000385250 93 ntBASIC21.17■□□□□ 0.98
RTL3Q8N8U3 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 RARRES2P4-201ENST00000514074 484 ntBASIC21.17■□□□□ 0.98
RTL3Q8N8U3 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
RTL3Q8N8U3 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 AL050303.2-201ENST00000619798 666 ntBASIC21.16■□□□□ 0.98
RTL3Q8N8U3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
RTL3Q8N8U3 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 STAC-204ENST00000457375 1366 ntTSL 2 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 VMO1-204ENST00000441199 741 ntTSL 2 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 AC069236.1-201ENST00000604339 616 ntBASIC21.15■□□□□ 0.98
RTL3Q8N8U3 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 AC006128.1-201ENST00000624704 1661 ntBASIC21.15■□□□□ 0.98
RTL3Q8N8U3 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 COPS7A-208ENST00000538410 1610 ntTSL 3 BASIC21.15■□□□□ 0.98
RTL3Q8N8U3 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
RTL3Q8N8U3 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.98
RTL3Q8N8U3 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
RTL3Q8N8U3 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
RTL3Q8N8U3 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
RTL3Q8N8U3 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 AC006970.2-201ENST00000450065 779 ntBASIC21.13■□□□□ 0.97
RTL3Q8N8U3 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 AC090192.1-201ENST00000517740 490 ntBASIC21.13■□□□□ 0.97
RTL3Q8N8U3 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 OR10C1-204ENST00000622521 1039 ntBASIC21.13■□□□□ 0.97
RTL3Q8N8U3 AC008694.1-202ENST00000636953 945 ntBASIC21.13■□□□□ 0.97
RTL3Q8N8U3 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
RTL3Q8N8U3 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 CHRDL2-203ENST00000376332 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 AC133552.2-202ENST00000575694 574 ntBASIC21.12■□□□□ 0.97
RTL3Q8N8U3 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
RTL3Q8N8U3 AC027702.1-201ENST00000563810 1770 ntBASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms