Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 AC120498.8-201ENST00000614275 531 ntBASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 AC068473.5-201ENST00000616428 2072 ntBASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SLC44A3Q8N4M1 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
SLC44A3Q8N4M1 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 AL135905.2-201ENST00000584934 1404 ntBASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 GGT1-206ENST00000404223 952 ntTSL 2 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 AC239809.2-201ENST00000415381 517 ntBASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 AC087499.1-201ENST00000418141 1075 ntBASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 DHDH-203ENST00000522614 776 ntTSL 5 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 AC110285.5-201ENST00000611501 352 ntBASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
SLC44A3Q8N4M1 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 MIR4785-201ENST00000585005 73 ntBASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
SLC44A3Q8N4M1 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SLC44A3Q8N4M1 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.99
SLC44A3Q8N4M1 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
SLC44A3Q8N4M1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 SSX2IP-203ENST00000437941 5843 ntTSL 2 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 AC116050.2-201ENST00000612102 1779 ntBASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
SLC44A3Q8N4M1 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SLC44A3Q8N4M1 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 15.9 ms