Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC25.28■■□□□ 1.64
USP48Q86UV5 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP48Q86UV5 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP48Q86UV5 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC25.28■■□□□ 1.64
USP48Q86UV5 MIR1224-201ENST00000408193 85 ntBASIC25.28■■□□□ 1.64
USP48Q86UV5 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
USP48Q86UV5 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC25.28■■□□□ 1.64
USP48Q86UV5 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP48Q86UV5 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
USP48Q86UV5 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC25.28■■□□□ 1.64
USP48Q86UV5 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC25.28■■□□□ 1.64
USP48Q86UV5 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 AP006587.3-201ENST00000525742 1516 ntBASIC25.27■■□□□ 1.64
USP48Q86UV5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC25.27■■□□□ 1.64
USP48Q86UV5 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC25.27■■□□□ 1.64
USP48Q86UV5 AL162412.1-201ENST00000567129 965 ntBASIC25.27■■□□□ 1.64
USP48Q86UV5 AL034346.1-201ENST00000568244 1277 ntBASIC25.27■■□□□ 1.64
USP48Q86UV5 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 RBM17P2-201ENST00000616397 1405 ntBASIC25.27■■□□□ 1.64
USP48Q86UV5 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
USP48Q86UV5 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC25.27■■□□□ 1.64
USP48Q86UV5 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
USP48Q86UV5 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP48Q86UV5 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC25.26■■□□□ 1.63
USP48Q86UV5 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC25.26■■□□□ 1.63
USP48Q86UV5 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
USP48Q86UV5 LSM12P1-201ENST00000411836 588 ntBASIC25.26■■□□□ 1.63
USP48Q86UV5 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC25.26■■□□□ 1.63
USP48Q86UV5 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.26■■□□□ 1.63
USP48Q86UV5 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC25.26■■□□□ 1.63
USP48Q86UV5 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP48Q86UV5 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP48Q86UV5 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP48Q86UV5 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
USP48Q86UV5 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC25.25■■□□□ 1.63
USP48Q86UV5 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP48Q86UV5 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP48Q86UV5 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC25.25■■□□□ 1.63
USP48Q86UV5 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP48Q86UV5 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC25.25■■□□□ 1.63
USP48Q86UV5 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC25.25■■□□□ 1.63
USP48Q86UV5 AC008403.3-201ENST00000598924 454 ntBASIC25.25■■□□□ 1.63
USP48Q86UV5 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.25■■□□□ 1.63
USP48Q86UV5 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP48Q86UV5 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP48Q86UV5 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
USP48Q86UV5 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
USP48Q86UV5 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC25.25■■□□□ 1.63
USP48Q86UV5 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC25.24■■□□□ 1.63
USP48Q86UV5 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP48Q86UV5 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP48Q86UV5 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP48Q86UV5 GXYLT1P3-201ENST00000453058 1193 ntBASIC25.24■■□□□ 1.63
USP48Q86UV5 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC25.24■■□□□ 1.63
USP48Q86UV5 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC25.24■■□□□ 1.63
USP48Q86UV5 MIR4497-201ENST00000583208 89 ntBASIC25.24■■□□□ 1.63
USP48Q86UV5 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP48Q86UV5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC25.24■■□□□ 1.63
USP48Q86UV5 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
USP48Q86UV5 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.23■■□□□ 1.63
USP48Q86UV5 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC25.23■■□□□ 1.63
USP48Q86UV5 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC25.23■■□□□ 1.63
USP48Q86UV5 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP48Q86UV5 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC25.23■■□□□ 1.63
USP48Q86UV5 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP48Q86UV5 AC211429.1-201ENST00000415277 523 ntBASIC25.23■■□□□ 1.63
USP48Q86UV5 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC25.23■■□□□ 1.63
USP48Q86UV5 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC25.23■■□□□ 1.63
USP48Q86UV5 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC25.23■■□□□ 1.63
USP48Q86UV5 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC25.23■■□□□ 1.63
USP48Q86UV5 AC073912.3-201ENST00000624414 853 ntBASIC25.23■■□□□ 1.63
USP48Q86UV5 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP48Q86UV5 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
USP48Q86UV5 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC25.22■■□□□ 1.63
USP48Q86UV5 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP48Q86UV5 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC25.22■■□□□ 1.63
USP48Q86UV5 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.22■■□□□ 1.63
USP48Q86UV5 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP48Q86UV5 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP48Q86UV5 MIR718-201ENST00000390190 70 ntBASIC25.22■■□□□ 1.63
USP48Q86UV5 POU5F1P4-201ENST00000413175 1085 ntBASIC25.22■■□□□ 1.63
USP48Q86UV5 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC25.22■■□□□ 1.63
USP48Q86UV5 FAM210CP-201ENST00000445714 574 ntBASIC25.22■■□□□ 1.63
USP48Q86UV5 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC25.22■■□□□ 1.63
USP48Q86UV5 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC25.22■■□□□ 1.63
USP48Q86UV5 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC25.22■■□□□ 1.63
USP48Q86UV5 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP48Q86UV5 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
USP48Q86UV5 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC25.22■■□□□ 1.63
USP48Q86UV5 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC25.22■■□□□ 1.63
USP48Q86UV5 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.21■■□□□ 1.63
USP48Q86UV5 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.21■■□□□ 1.63
USP48Q86UV5 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
USP48Q86UV5 PBX1-209ENST00000485769 834 ntTSL 2 BASIC25.21■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms