Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 HOXC9-203ENST00000508190 1505 ntAPPRIS P1 TSL 3 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 AC243732.1-201ENST00000612648 864 ntBASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 FGF8-207ENST00000618991 856 ntTSL 3 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
TRIM40Q6P9F5 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 ME3-201ENST00000323418 1068 ntTSL 5 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 AC006015.1-201ENST00000429970 570 ntBASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 RBM17P2-201ENST00000616397 1405 ntBASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
TRIM40Q6P9F5 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
TRIM40Q6P9F5 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 EXOC3-AS1-202ENST00000623673 1663 ntBASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 AC010536.3-201ENST00000620306 533 ntBASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
TRIM40Q6P9F5 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.72■□□□□ 0.75
TRIM40Q6P9F5 BID-214ENST00000617586 542 ntTSL 5 BASIC19.72■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms