Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
PPP4R4Q6NUP7 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 RGMB-207ENST00000513185 2052 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
PPP4R4Q6NUP7 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 MPST-208ENST00000628507 698 ntTSL 5 BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC19.68■□□□□ 0.74
PPP4R4Q6NUP7 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 STX4-202ENST00000394998 1498 ntTSL 2 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 AICDA-202ENST00000537228 667 ntTSL 5 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 OR7E47P-201ENST00000546390 1422 ntBASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
PPP4R4Q6NUP7 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 EI24-211ENST00000534546 1544 ntTSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 AC087239.1-201ENST00000622671 572 ntBASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.66■□□□□ 0.74
PPP4R4Q6NUP7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 IRS3P-201ENST00000223076 1006 ntBASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 IGHV3-19-201ENST00000521488 291 ntBASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
PPP4R4Q6NUP7 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 PLK5-205ENST00000642079 1969 ntBASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 BID-204ENST00000399767 2129 ntTSL 2 BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
PPP4R4Q6NUP7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms