Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
RNFT1Q5M7Z0 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 MYB-221ENST00000527615 2381 ntTSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 IRX5-204ENST00000560154 879 ntTSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 MMD2-204ENST00000612910 778 ntTSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
RNFT1Q5M7Z0 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 PNMA6B-201ENST00000538162 1200 ntBASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 AC105020.6-201ENST00000621523 1217 ntBASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
RNFT1Q5M7Z0 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 FBXO6-201ENST00000376753 1520 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 AL158047.1-201ENST00000445918 881 ntBASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
RNFT1Q5M7Z0 RNH1-222ENST00000533410 1829 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 AC092368.3-202ENST00000574180 1591 ntBASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 AC133561.1-201ENST00000568600 2415 ntBASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 NXN-202ENST00000537628 1340 ntTSL 3 BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 AC142381.4-202ENST00000563973 229 ntBASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
RNFT1Q5M7Z0 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
RNFT1Q5M7Z0 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.59■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms