Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.97■□□□□ 0.95
USP39Q53GS9 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.97■□□□□ 0.95
USP39Q53GS9 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.97■□□□□ 0.95
USP39Q53GS9 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.97■□□□□ 0.95
USP39Q53GS9 FAM21FP-204ENST00000608637 956 ntBASIC20.97■□□□□ 0.95
USP39Q53GS9 AC100791.3-201ENST00000617619 330 ntBASIC20.97■□□□□ 0.95
USP39Q53GS9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
USP39Q53GS9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USP39Q53GS9 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.97■□□□□ 0.95
USP39Q53GS9 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.96■□□□□ 0.95
USP39Q53GS9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP39Q53GS9 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC20.96■□□□□ 0.95
USP39Q53GS9 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP39Q53GS9 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.96■□□□□ 0.95
USP39Q53GS9 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
USP39Q53GS9 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.96■□□□□ 0.95
USP39Q53GS9 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP39Q53GS9 AC008550.1-201ENST00000511500 884 ntBASIC20.96■□□□□ 0.95
USP39Q53GS9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP39Q53GS9 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USP39Q53GS9 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.96■□□□□ 0.95
USP39Q53GS9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USP39Q53GS9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.95■□□□□ 0.94
USP39Q53GS9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.95■□□□□ 0.94
USP39Q53GS9 KRT17P1-201ENST00000399211 1546 ntBASIC20.95■□□□□ 0.94
USP39Q53GS9 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 AL355472.2-201ENST00000422958 438 ntBASIC20.95■□□□□ 0.94
USP39Q53GS9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.95■□□□□ 0.94
USP39Q53GS9 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.95■□□□□ 0.94
USP39Q53GS9 AC060766.5-201ENST00000590539 871 ntBASIC20.95■□□□□ 0.94
USP39Q53GS9 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.95■□□□□ 0.94
USP39Q53GS9 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USP39Q53GS9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.95■□□□□ 0.94
USP39Q53GS9 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.94■□□□□ 0.94
USP39Q53GS9 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USP39Q53GS9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP39Q53GS9 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP39Q53GS9 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP39Q53GS9 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.94■□□□□ 0.94
USP39Q53GS9 CYP2T3P-201ENST00000601990 817 ntBASIC20.94■□□□□ 0.94
USP39Q53GS9 HLA-B-256ENST00000639848 1089 ntBASIC20.94■□□□□ 0.94
USP39Q53GS9 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP39Q53GS9 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.94■□□□□ 0.94
USP39Q53GS9 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USP39Q53GS9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP39Q53GS9 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC20.93■□□□□ 0.94
USP39Q53GS9 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.93■□□□□ 0.94
USP39Q53GS9 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USP39Q53GS9 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
USP39Q53GS9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP39Q53GS9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP39Q53GS9 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.93■□□□□ 0.94
USP39Q53GS9 AC007375.3-201ENST00000600936 2314 ntBASIC20.93■□□□□ 0.94
USP39Q53GS9 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC20.93■□□□□ 0.94
USP39Q53GS9 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
USP39Q53GS9 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.93■□□□□ 0.94
USP39Q53GS9 AC245052.3-201ENST00000450182 901 ntBASIC20.93■□□□□ 0.94
USP39Q53GS9 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.93■□□□□ 0.94
USP39Q53GS9 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC20.93■□□□□ 0.94
USP39Q53GS9 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP39Q53GS9 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.93■□□□□ 0.94
USP39Q53GS9 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC20.93■□□□□ 0.94
USP39Q53GS9 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP39Q53GS9 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
USP39Q53GS9 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
USP39Q53GS9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC20.92■□□□□ 0.94
USP39Q53GS9 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 MIR718-201ENST00000390190 70 ntBASIC20.92■□□□□ 0.94
USP39Q53GS9 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC20.92■□□□□ 0.94
USP39Q53GS9 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC20.92■□□□□ 0.94
USP39Q53GS9 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC20.92■□□□□ 0.94
USP39Q53GS9 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 AC091799.1-201ENST00000422823 811 ntBASIC20.92■□□□□ 0.94
USP39Q53GS9 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.92■□□□□ 0.94
USP39Q53GS9 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.92■□□□□ 0.94
USP39Q53GS9 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.92■□□□□ 0.94
USP39Q53GS9 AL589743.5-201ENST00000616611 1050 ntBASIC20.92■□□□□ 0.94
USP39Q53GS9 AL359736.2-201ENST00000621992 437 ntBASIC20.92■□□□□ 0.94
USP39Q53GS9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.92■□□□□ 0.94
USP39Q53GS9 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
USP39Q53GS9 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
USP39Q53GS9 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.91■□□□□ 0.94
USP39Q53GS9 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms